RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TGDSO95455 350 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 SEC24AO95486 1093 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 FGF19O95750 216 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 PENKP01210 267 aaPredicted RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 ACHEP22303 614 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 TAF6P49848 677 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 SNRPEP62304 92 aaKnown RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 GAGE2BQ13066 116 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ZNF234Q14588 700 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ZNF273Q14593 569 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 VWC2Q2TAL6 325 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 QRICH1Q2TAL8 776 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 GAGE2EQ4V326 116 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ZDHHC20Q5W0Z9 365 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ALS2CLQ60I27 953 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 TPGS2Q68CL5 300 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 GAGE2AQ6NT46 116 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ARHGAP11AQ6P4F7 1023 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 FIGLAQ6QHK4 219 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 MFSD6Q6ZSS7 791 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 Q75L30 129 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 TRMT11Q7Z4G4 463 aaKnown RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 TTC30BQ8N4P2 665 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ZNF485Q8NCK3 441 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 THAP6Q8TBB0 222 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 UTP15Q8TED0 518 aaKnown RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 PIGTQ969N2 578 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 FAM162AQ96A26 154 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 ERLEC1Q96DZ1 483 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 CATSPER2Q96P56 530 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 SPAG5Q96R06 1193 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 GPATCH1Q9BRR8 931 aaKnown RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 DESI2Q9BSY9 194 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 EGLN1Q9GZT9 426 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 MIOSQ9NXC5 875 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 RCC2Q9P258 522 aaKnown RBP3.51□□□□□ -1.85
CD44-235ENST00000532339 RHCGQ9UBD6 479 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 GAGE2DQ9UEU5 116 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 DLGAP4Q9Y2H0 992 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 DOCK5Q9H7D0 1870 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 MAP1AP78559 2803 aaPredicted RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 IGKV6D-21A0A0A0MT36 114 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 TRAV34A0A0B4J273 112 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 TRIM77I1YAP6 450 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 SSX4O60224 188 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 WISP2O76076 250 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ATP5BP06576 529 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 OR52Z1P0C646 297 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 DANCRP0C864 163 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CYP11B2P19099 503 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 GABRA5P31644 462 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 OPRD1P41143 372 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 TDO2P48775 406 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CTSCP53634 463 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ISL1P61371 349 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 TUBB4BP68371 445 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CDK3Q00526 305 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 PLD1Q13393 1074 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 PTPRCAPQ14761 206 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ZRANB3Q5FWF4 1079 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 SIRPB2Q5JXA9 342 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 MPP7Q5T2T1 576 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 SFMBT2Q5VUG0 894 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 SLC35E4Q6ICL7 350 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 SHQ1Q6PI26 577 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 PET117Q6UWS5 81 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CEACAM20Q6UY09 585 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 PPP1R21Q6ZMI0 780 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 Q71RC1 249 aaPredicted RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 CATSPER4Q7RTX7 472 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 GPR180Q86V85 440 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CCAR2Q8N163 923 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 SLC5A8Q8N695 610 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 IQUBQ8NA54 791 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 OR10V1Q8NGI7 309 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 WDR36Q8NI36 951 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 ZFAND2BQ8WV99 257 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 LGALS12Q96DT0 336 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 VMP1Q96GC9 406 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ATXN7L3BQ96GX2 97 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 C17orf77Q96MU5 243 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 QRFPRQ96P65 431 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 OR6C1Q96RD1 312 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CITED2Q99967 270 aaPredicted RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 NEURL2Q9BR09 285 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 THUMPD3Q9BV44 507 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 GPR174Q9BXC1 333 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 C2orf40Q9H1Z8 148 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 CXXC4Q9H2H0 198 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 XAB2Q9HCS7 855 aaKnown RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 TM9SF3Q9HD45 589 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 PFDN4Q9NQP4 134 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 AGPAT5Q9NUQ2 364 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ARGLU1Q9NWB6 273 aaPredicted RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 DNAJB9Q9UBS3 223 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 POMT1Q9Y6A1 747 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 PKDREJQ9NTG1 2253 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 ANK1P16157 1881 aa3.5□□□□□ -1.85
CD44-235ENST00000532339 NUP210Q8TEM1 1887 aaPredicted RBP3.5□□□□□ -1.85
CD44-235ENST00000532339 IGKV3D-15A0A087WSY6 115 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms