RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 RNF111Q6ZNA4 994 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 NDNFQ8TB73 568 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 CHPT1Q8WUD6 406 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 C15orf40Q8WUR7 153 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 NKD1Q969G9 470 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 SLCO4A1Q96BD0 722 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 SIPA1Q96FS4 1042 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 POLE4Q9NR33 117 aa13.26□□□□□ -0.29
SYNPO-205ENST00000522122 GMPR2Q9P2T1 348 aaKnown RBP13.26□□□□□ -0.29
SYNPO-205ENST00000522122 IFI30P13284 250 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 CRISP1P54107 249 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 OR12D2P58182 307 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 PUM1Q14671 1186 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 SLC14A2Q15849 920 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 TBC1D25Q3MII6 688 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 KIAA0319Q5VV43 1072 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 THOC7Q6I9Y2 204 aaKnown RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 LETMD1Q6P1Q0 360 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 FATE1Q969F0 183 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 MUL1Q969V5 352 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 OTUB2Q96DC9 234 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 SLC2A11Q9BYW1 496 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 NAA50Q9GZZ1 169 aaKnown RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 OR51I1Q9H343 314 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 MYO9BQ13459 2157 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 C2orf78A6NCI8 922 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 PPP6CO00743 305 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 FGF18O76093 207 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF865P0CJ78 1059 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF140P52738 457 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 PRSS48Q7RTY5 328 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 VTCN1Q7Z7D3 282 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 CHDHQ8NE62 594 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 CEP76Q8TAP6 659 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 LRIG1Q96JA1 1093 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 UCKL1Q9NWZ5 548 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 FBXL12Q9NXK8 326 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 SLCO3A1Q9UIG8 710 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 ERVK-11Q9UQG0 969 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 C2orf92A0A1B0GVN3 265 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 SBK3P0C264 359 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 BPIP17213 487 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 MAP3K8P41279 467 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 ARPC4P59998 168 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 VLDLRP98155 873 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 CD200R1Q8TD46 325 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 C17orf50Q8WW18 174 aa13.25□□□□□ -0.29
SYNPO-205ENST00000522122 BHLHE41Q9C0J9 482 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 INTS6Q9UL03 887 aaKnown RBP13.25□□□□□ -0.29
SYNPO-205ENST00000522122 PROM1O43490 865 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 IFNA7P01567 189 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ALPLP05186 524 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 CD9P21926 228 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 SHMT2P34897 504 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 CBX5P45973 191 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 MASP1P48740 699 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GRSF1Q12849 480 aaKnown RBP eCLIP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 CDK5R2Q13319 367 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 SPHARQ15513 63 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 C18orf21Q32NC0 220 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 RTP2Q5QGT7 225 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 LIPKQ5VXJ0 399 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GRASPQ7Z6J2 395 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 BBS10Q8TAM1 723 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GNPDA2Q8TDQ7 276 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 BOCQ9BWV1 1114 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 IFT46Q9NQC8 304 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 LYARQ9NX58 379 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GPN3Q9UHW5 284 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GABRQQ9UN88 632 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 COQ9O75208 318 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 MT-ND5P03915 603 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ATXN1LP0C7T5 689 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 RHCEP18577 417 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ATP5A1P25705 553 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ARNTP27540 789 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 DCTP40126 519 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 MAZP56270 477 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 MLLT1Q03111 559 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 SLC35F1Q5T1Q4 408 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF691Q5VV52 312 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 MRPL10Q7Z7H8 261 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 FUNDC1Q8IVP5 155 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 CCDC116Q8IYX3 515 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 PROKR2Q8NFJ6 384 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ADAD1Q96M93 576 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ACSL5Q9ULC5 683 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 TMEM5Q9Y2B1 443 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 B4GAT1O43505 415 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 ZNF821O75541 412 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 RPP14O95059 124 aaKnown RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 OR12D1P0DN82 309 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 JUNBP17275 347 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-205ENST00000522122 NRIP1P48552 1158 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 PPP5CP53041 499 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 TAS2R43P59537 309 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 C6orf183Q5T699 404 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 GALNTL5Q7Z4T8 443 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 Q9N2J8 555 aa13.24□□□□□ -0.29
SYNPO-205ENST00000522122 HCN2Q9UL51 889 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms