RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LHPPQ9H008 270 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 ILKAPQ9H0C8 392 aaPredicted RBP13.39□□□□□ -0.27
NUP54-216ENST00000514901 ZNF160Q9HCG1 818 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 MLXIPLQ9NP71 852 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 NECTIN3Q9NQS3 549 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 MCM8Q9UJA3 840 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 DOCK10Q96BY6 2186 aa13.39□□□□□ -0.27
NUP54-216ENST00000514901 A0A1W2PR48 441 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 DNAJB5O75953 348 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 MYO1DO94832 1006 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 GBAP04062 536 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ALPPP05187 535 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 NR2F6P10588 404 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 CHN1P15882 459 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 BGNP21810 368 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 PRPH2P23942 346 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ITGA3P26006 1051 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 SLC1A6P48664 564 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 HNRNPFP52597 415 aaKnown RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 HNRNPH2P55795 449 aaKnown RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 MYBPC3Q14896 1274 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 TERF2Q15554 542 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 UGT3A2Q3SY77 523 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 TTMPQ5BVD1 217 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ATG16L1Q676U5 607 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 C18orf63Q68DL7 685 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 PLAG1Q6DJT9 500 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 TCTN3Q6NUS6 607 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 PAPD4Q6PIY7 484 aaKnown RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 PCSK4Q6UW60 755 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 SCIMPQ6UWF3 145 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 HPS6Q86YV9 775 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 PARP9Q8IXQ6 854 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 EXD3Q8N9H8 876 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 TMEM52Q8NDY8 209 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 C9orf43Q8TAL5 461 aaPredicted RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 M1APQ8TC57 530 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 MGARPQ8TDB4 240 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ABHD17AQ96GS6 310 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 APIPQ96GX9 242 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 WDR77Q9BQA1 342 aaPredicted RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 FAIM2Q9BWQ8 316 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ALOXE3Q9BYJ1 711 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 GPR83Q9NYM4 423 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 C5AR2Q9P296 337 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 VTI1BQ9UEU0 232 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 ZDHHC2Q9UIJ5 367 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 WBP11Q9Y2W2 641 aaKnown RBP13.38□□□□□ -0.27
NUP54-216ENST00000514901 RAP2CQ9Y3L5 183 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 DNAJC15Q9Y5T4 150 aa13.38□□□□□ -0.27
NUP54-216ENST00000514901 COL6A6A6NMZ7 2263 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 A6NL46 340 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 PCDH7O60245 1069 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 SASH3O75995 380 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 GPR75O95800 540 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 PRR35P0CG20 571 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 ARRB2P32121 409 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 BTKQ06187 659 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 NDUFAF5Q5TEU4 345 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 VWA5B1Q5TIE3 1220 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 OR52E8Q6IFG1 317 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 TMEM132CQ8N3T6 1108 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 FDCSPQ8NFU4 85 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 TWIST2Q8WVJ9 160 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 SLC39A7Q92504 469 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 ANKRD9Q96BM1 317 aaPredicted RBP13.37□□□□□ -0.27
NUP54-216ENST00000514901 TM4SF18Q96CE8 201 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 C11orf24Q96F05 449 aaPredicted RBP13.37□□□□□ -0.27
NUP54-216ENST00000514901 THOC3Q96J01 351 aaKnown RBP13.37□□□□□ -0.27
NUP54-216ENST00000514901 MESP1Q9BRJ9 268 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 PELOQ9BRX2 385 aaKnown RBP13.37□□□□□ -0.27
NUP54-216ENST00000514901 SLC25A18Q9H1K4 315 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 MANSC1Q9H8J5 431 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 ADAP2Q9NPF8 381 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 THAP1Q9NVV9 213 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 C1orf109Q9NX04 203 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 PSME2Q9UL46 239 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 FIS1Q9Y3D6 152 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 ZNF451Q9Y4E5 1061 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 CLDN16Q9Y5I7 305 aa13.37□□□□□ -0.27
NUP54-216ENST00000514901 IGHV3-20A0A0C4DH32 117 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 GNG14A0A1W2PPG7 69 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 C1orf226A1L170 272 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 SAGE2PA6NJ88 616 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 ATP8B1O43520 1251 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 ITM2AO43736 263 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 SEC22BO75396 215 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 SEC24DO94855 1032 aaPredicted RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 AIFM1O95831 613 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 IFNA16P05015 189 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 COX7A2P14406 83 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 DRD2P14416 443 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 TIA1P31483 386 aaKnown RBP eCLIP13.36□□□□□ -0.27
NUP54-216ENST00000514901 RPL14P50914 215 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 PGDP52209 483 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 IGLV3-21P80748 117 aaPredicted RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 Q0VFX4 171 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 BST1Q10588 318 aa13.36□□□□□ -0.27
NUP54-216ENST00000514901 ELAVL1Q15717 326 aaKnown RBP13.36□□□□□ -0.27
NUP54-216ENST00000514901 BTBD16Q32M84 506 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms