RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 DDX28Q9NUL7 540 aaKnown RBP3.42□□□□□ -1.86
SMC4-225ENST00000497203 NDE1Q9NXR1 346 aa3.42□□□□□ -1.86
SMC4-225ENST00000497203 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.42□□□□□ -1.86
SMC4-225ENST00000497203 MRTO4Q9UKD2 239 aaKnown RBP3.42□□□□□ -1.86
SMC4-225ENST00000497203 OR1A2Q9Y585 309 aa3.42□□□□□ -1.86
SMC4-225ENST00000497203 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 KRT87PA6NCN2 255 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 MPTX1A8MV57 137 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TRAFD1O14545 582 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 TFECO14948 347 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 B4GAT1O43505 415 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TLX2O43763 284 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 SSX5O60225 188 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 KIAA0513O60268 411 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 NME2P1O60361 137 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 SLC4A1P02730 911 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 APRTP07741 180 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TRIM49P0CI25 452 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TRIM49CP0CI26 452 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TPBGLP0DKB5 382 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 PCP11498 1178 aaKnown RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 B4GALT1P15291 398 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 PDHA2P29803 388 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 PKLRP30613 574 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 SFNP31947 248 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 FCGR2BP31994 310 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 FCGR2CP31995 323 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 NUMBP49757 651 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 FHITP49789 147 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 NDST2P52849 883 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 CRYBA2P53672 197 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 HILS1P60008 231 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 HERV-K104P63124 156 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 ZNF177Q13360 481 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 GAMTQ14353 236 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 PDK1Q15118 436 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TRADDQ15628 312 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 FAM189A2Q15884 450 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 C14orf177Q52M58 125 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 PRAMEF7Q5VXH5 474 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 NKAIN2Q5VXU1 208 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 HIST2H2AA3Q6FI13 130 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 TAF8Q7Z7C8 310 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 WDSUB1Q8N9V3 476 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 OR6F1Q8NGZ6 308 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 SPATA13Q96N96 652 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 RUNDC3BQ96NL0 473 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 OPRPNQ99935 248 aaPredicted RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 XPO4Q9C0E2 1151 aaKnown RBP3.41□□□□□ -1.86
SMC4-225ENST00000497203 WWP1Q9H0M0 922 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 NMUR1Q9HB89 426 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 VPS54Q9P1Q0 977 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 BAIAP2L1Q9UHR4 511 aa3.41□□□□□ -1.86
SMC4-225ENST00000497203 CFAP73A6NFT4 308 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 CCDC69A6NI79 296 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 PRPSAP2O60256 369 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 CSDE1O75534 798 aaKnown RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 ZNF821O75541 412 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 OR6A2O95222 327 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 TXNDC12O95881 172 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 CXCL10P02778 98 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 PGK2P07205 417 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 AOC1P19801 751 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 GLRA1P23415 457 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 ACP1P24666 158 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 KRTAP10-5P60370 271 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 RBBP4Q09028 425 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 MSLNQ13421 630 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 KIAA0141Q14154 515 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 FASTKD3Q14CZ7 662 aaKnown RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 CARTPTQ16568 116 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 TTC31Q49AM3 519 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 HERC4Q5GLZ8 1057 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 RTL6Q6ICC9 239 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 OLFM4Q6UX06 510 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 MFSD7Q6UXD7 560 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 CDHR3Q6ZTQ4 885 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 ADAMTSL2Q86TH1 951 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 LRRTM1Q86UE6 522 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 KDM8Q8N371 416 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 METTL4Q8N3J2 472 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 ANKRD20A12PQ8NF67 263 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 OR52B6Q8NGF0 335 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 OR4L1Q8NH43 312 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 ATP8B4Q8TF62 1192 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 LIPHQ8WWY8 451 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 RAB39BQ96DA2 213 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 CNRIP1Q96F85 164 aaPredicted RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 GPR137Q96N19 417 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 LGMNQ99538 433 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 FUNDC2Q9BWH2 189 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 FGFBP2Q9BYJ0 223 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 ATG10Q9H0Y0 220 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 SLC26A1Q9H2B4 701 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 DPEP3Q9H4B8 488 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 DNPEPQ9ULA0 475 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 PIN4Q9Y237 131 aaKnown RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 MRPS18CQ9Y3D5 142 aaKnown RBP3.4□□□□□ -1.87
SMC4-225ENST00000497203 RNF215Q9Y6U7 377 aa3.4□□□□□ -1.87
SMC4-225ENST00000497203 FGD5Q6ZNL6 1462 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms