RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NXPE2Q96DL1 559 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 RANBP9Q96S59 729 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TIGARQ9NQ88 270 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 LAMP5Q9UJQ1 280 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 AURKAO14965 403 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 VILLO15195 856 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TLX2O43763 284 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 OXSR1O95747 527 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TFPTP0C1Z6 253 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 JUPP14923 745 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 MRPL49Q13405 166 aaKnown RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 PSAPL1Q6NUJ1 521 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 ZC3H14Q6PJT7 736 aaKnown RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TCEAL8Q8IYN2 117 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 FANK1Q8TC84 345 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 RHCGQ9UBD6 479 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CACNA1FO60840 1977 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 C1orf226A1L170 272 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 PLD2O14939 933 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 OR12D1P0DN82 309 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CD36P16671 472 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 ENDOUP21128 410 aaKnown RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF773Q6PK81 442 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 FCRL3Q96P31 734 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TTYH2Q9BSA4 534 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 SCML1Q9UN30 329 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 FEZF1A0PJY2 475 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 HTR1AP08908 422 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 DRD1P21728 446 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TIA1P31483 386 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CTBP2P56545 445 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 PPP1R8Q12972 351 aaKnown RBP12.62□□□□□ -0.39
PTPRF-215ENST00000496447 NNATQ16517 81 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 WDTC1Q8N5D0 677 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 LMO3Q8TAP4 145 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 SLC22A8Q8TCC7 542 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 BORCS6Q96GS4 357 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 C11orf98E9PRG8 122 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 H3BSH0 61 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 M0QZQ0 153 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 RLN2P04090 185 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 PSKH1P11801 424 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ERP29P30040 261 aaKnown RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 WDR5P61964 334 aaKnown RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF181Q2M3W8 571 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 OR5L2Q8NGL0 311 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 GNPDA2Q8TDQ7 276 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ASB12Q8WXK4 309 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 HDAC2Q92769 488 aaKnown RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 OSTF1Q92882 214 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 OR1F2PQ96R84 312 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 TMED9Q9BVK6 235 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 DCSTAMPQ9H295 470 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 RDH8Q9NYR8 311 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ACTR3BQ9P1U1 418 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CYTH4Q9UIA0 394 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 DNMT3AQ9Y6K1 912 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 NPPAP01160 153 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 SLC6A4P31645 630 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 OTX2P32243 289 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 SCAPQ12770 1279 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ZMYND11Q15326 602 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 RABL3Q5HYI8 236 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CHRDL2Q6WN34 429 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 SLC36A4Q6YBV0 504 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 LRRC25Q8N386 305 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ANKLE1Q8NAG6 615 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM203Q969S6 136 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 TESCQ96BS2 214 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 EMC8O43402 210 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 OR7A10O76100 309 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF84P51523 738 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 LRIF1Q5T3J3 769 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 PLD6Q8N2A8 252 aaKnown RBP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 RPLP0P6Q8NHW5 317 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 STON2Q8WXE9 905 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 BIRC7Q96CA5 298 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 TRIM64A6NGJ6 449 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CDC40O60508 579 aaKnown RBP eCLIP12.61□□□□□ -0.39
PTPRF-215ENST00000496447 ARL6IP5O75915 188 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 SPINT3P49223 89 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 NUDT6P53370 316 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CEBPGP53567 150 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CTC1Q2NKJ3 1217 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 WSCD2Q2TBF2 565 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CRTC1Q6UUV9 634 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CCDC115Q96NT0 180 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 F2RL3Q96RI0 385 aa12.61□□□□□ -0.39
PTPRF-215ENST00000496447 CIB4A0PJX0 185 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 METTL21EPA6NDL7 271 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 DFNA5O60443 496 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PRKACAP17612 351 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 HNRNPA2B1P22626 353 aaKnown RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 OCLNQ16625 522 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 RAET1LQ5VY80 246 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF283Q8N7M2 679 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 NELL2Q99435 816 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 CUEDC1Q9NWM3 386 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 COL2A1P02458 1487 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF821O75541 412 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms