RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	PRAME	P78395	509 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	RHAG	Q02094	409 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	CFHR3	Q02985	330 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	BMPR2	Q13873	1038 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	FRG1	Q14331	258 aa	Known RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	RNPS1	Q15287	305 aa	Known RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	NTRK2	Q16620	822 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	GSTA3	Q16772	222 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF628	Q5EBL2	1059 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ARMC12	Q5T9G4	340 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	TMEM154	Q6P9G4	183 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	DCUN1D2	Q6PH85	259 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	IYD	Q6PHW0	289 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	CEACAM20	Q6UY09	585 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF547	Q8IVP9	402 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	C11orf65	Q8NCR3	313 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	LPCAT1	Q8NF37	534 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	NEK11	Q8NG66	645 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	OR10G6	Q8NH81	332 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	GOT1L1	Q8NHS2	421 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	CT55	Q8WUE5	264 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	TEKT4	Q8WW24	435 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	TADA1	Q96BN2	335 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF653	Q96CK0	615 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	FAF2	Q96CS3	445 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	AP2M1	Q96CW1	435 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	SNRNP40	Q96DI7	357 aa	Known RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	PGAM5	Q96HS1	289 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	C9orf72	Q96LT7	481 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	TRIB3	Q96RU7	358 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ZPBP	Q9BS86	351 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ULBP3	Q9BZM4	244 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	RABEP2	Q9H5N1	569 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ZWILCH	Q9H900	591 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	UCK1	Q9HA47	277 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	FBXO8	Q9NRD0	319 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	SNX15	Q9NRS6	342 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ABCF3	Q9NUQ8	709 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	GIMAP4	Q9NUV9	329 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	ASF1B	Q9NVP2	202 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	KCTD5	Q9NXV2	234 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	MYO6	Q9UM54	1294 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	DTX4	Q9Y2E6	619 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	NTNG1	Q9Y2I2	539 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	PTRH2	Q9Y3E5	179 aa	Known RBP	4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	CLDN16	Q9Y5I7	305 aa		4.07	□□□□□ -1.76
VPS52-222	ENST00000495981	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	PKD1L1	Q8TDX9	2849 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	NOTCH1	P46531	2555 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	KIR2DS5	A0A0G2JLQ3	304 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981		A0A0G2JNG1	304 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	C1orf232	A0A0U1RR37	186 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981		A8MU76	341 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	TMCO5B	A8MYB1	307 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981		H0YIZ8	118 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	MKRN2OS	H3BPM6	223 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	C19orf84	I3L1E1	186 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	KIR2DS3	K7RE56	304 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	GAPDHS	O14556	408 aa	Predicted RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	CTDSP2	O14595	271 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	ADAMDEC1	O15204	470 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	LRRTM2	O43300	516 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	KIF1C	O43896	1103 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	HNRNPCL1	O60812	293 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	KIAA0754	O94854	1291 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	NXPH3	O95157	252 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	TGDS	O95455	350 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	PTMA	P06454	111 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	NR2F6	P10588	404 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	FGF5	P12034	268 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	TCN2	P20062	427 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	SERPINB6	P35237	376 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	IDUA	P35475	653 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	DLST	P36957	453 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	TNNT3	P45378	269 aa	Predicted RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	SLC15A1	P46059	708 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	SPINT3	P49223	89 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	CLCNKA	P51800	687 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	RPL26	P61254	145 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	RPS18	P62269	152 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	UBXN1	Q04323	297 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	GBE1	Q04446	702 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	ZBTB17	Q13105	803 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	DPYSL3	Q14195	570 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	GPR18	Q14330	331 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	GALNT3	Q14435	633 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	KIR2DS5	Q14953	304 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	PAFAH1B3	Q15102	231 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	STX1A	Q16623	288 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	ZRANB3	Q5FWF4	1079 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF789	Q5FWF6	425 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	FAM182A	Q5T1J6	154 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	PAPD7	Q5XG87	772 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	ATG9B	Q674R7	924 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	PPP1R2P3	Q6NXS1	205 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	CFAP77	Q6ZQR2	320 aa		4.06	□□□□□ -1.76
VPS52-222	ENST00000495981	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms