RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 MS4A6EQ96DS6 147 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 PDLIM5Q96HC4 596 aaKnown RBP7.56□□□□□ -1.2
USP39-216ENST00000490193 SIGLEC10Q96LC7 697 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 TSNARE1Q96NA8 513 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 SERPINB12Q96P63 405 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 QRFPRQ96P65 431 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 NDNQ99608 321 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 BAG1Q99933 345 aaPredicted RBP7.56□□□□□ -1.2
USP39-216ENST00000490193 DESI2Q9BSY9 194 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 CNPPD1Q9BV87 410 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 TRIM54Q9BYV2 358 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 LDAHQ9H6V9 325 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 ACKR4Q9NPB9 350 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 SEMA4BQ9NPR2 832 aaPredicted RBP7.56□□□□□ -1.2
USP39-216ENST00000490193 HOMER3Q9NSC5 361 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 BEX4Q9NWD9 120 aaPredicted RBP7.56□□□□□ -1.2
USP39-216ENST00000490193 VTI1BQ9UEU0 232 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 MTRF1LQ9UGC7 380 aaKnown RBP7.56□□□□□ -1.2
USP39-216ENST00000490193 DYRK1BQ9Y463 629 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 MAD1L1Q9Y6D9 718 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 CLCA3PQ9Y6N3 262 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 ZANQ9Y493 2812 aa7.56□□□□□ -1.2
USP39-216ENST00000490193 RTTNQ86VV8 2226 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 CSPG4Q6UVK1 2322 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 A0A088AWK7 358 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 LRIT2A6NDA9 550 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 CTNSO60931 367 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 EPPINO95925 133 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 TBX6O95947 436 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 FGGP02679 453 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 CD53P19397 219 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 ZNF10P21506 573 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 BMP5P22003 454 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 TACR1P25103 407 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 GABRB3P28472 473 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 ZNF75DP51815 510 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 DCAF7P61962 342 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 GPS1Q13098 491 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 BMPR2Q13873 1038 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 EFTUD2Q15029 972 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP39-216ENST00000490193 RBBP5Q15291 538 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 MPEG1Q2M385 716 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 ZNF791Q3KP31 576 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 ACSF3Q4G176 576 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 RBM20Q5T481 1227 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 TMEM198Q66K66 360 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 Q71RC1 249 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 MAATS1Q7Z4T9 603 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 TMPRSS11BQ86T26 416 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 THOC6Q86W42 341 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 PRIMA1Q86XR5 153 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 KIF18BQ86Y91 864 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 LACC1Q8IV20 430 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 CNTN4Q8IWV2 1026 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 KLHDC8AQ8IYD2 350 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 C7orf57Q8NEG2 295 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 OR5L2Q8NGL0 311 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 GABPB2Q8TAK5 448 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 NEIL3Q8TAT5 605 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 NUBPLQ8TB37 319 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 SLC2A12Q8TD20 617 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 PAQR8Q8TEZ7 354 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 FAR2Q96K12 515 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 COX4I2Q96KJ9 171 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 NT5DC2Q9H857 520 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 NEUROD4Q9HD90 331 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 ZFP64Q9NPA5 681 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 IARS2Q9NSE4 1012 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 CORO1CQ9ULV4 474 aaPredicted RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 DAPP1Q9UN19 280 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 KCNE2Q9Y6J6 123 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 COL6A5A8TX70 2615 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 FBN1P35555 2871 aaKnown RBP7.55□□□□□ -1.2
USP39-216ENST00000490193 DOCK7Q96N67 2140 aa7.55□□□□□ -1.2
USP39-216ENST00000490193 KIAA1549Q9HCM3 1950 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 TUBAL3A6NHL2 446 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 LRRC3CA6NJW4 275 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 AHRRA9YTQ3 701 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 ERI3O43414 337 aaKnown RBP7.54□□□□□ -1.2
USP39-216ENST00000490193 B3GALT2O43825 422 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 NRDCO43847 1150 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 CLEC3AO75596 197 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 GUCA1CO95843 209 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 AHSGP02765 367 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 IFNA16P05015 189 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 CCDC175P0C221 793 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 RFPL3SP0C7P2 107 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 SAT1P21673 171 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 HPDP32754 393 aaPredicted RBP7.54□□□□□ -1.2
USP39-216ENST00000490193 PIGAP37287 484 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 VPS41P49754 854 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 LIM2P55344 173 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 NKX6-1P78426 367 aaPredicted RBP7.54□□□□□ -1.2
USP39-216ENST00000490193 CDKL1Q00532 357 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 SERTAD2Q14140 314 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 RCN2Q14257 317 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 CRYMQ14894 314 aa7.54□□□□□ -1.2
USP39-216ENST00000490193 TRIP13Q15645 432 aaPredicted RBP7.54□□□□□ -1.2
USP39-216ENST00000490193 PIGGQ5H8A4 983 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms