RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 ZIC1Q15915 447 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 NDUFA9Q16795 377 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 NKAIN1Q4KMZ8 207 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 CATSPEREQ5SY80 951 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 AGAP7PQ5VUJ5 663 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 FCRL6Q6DN72 434 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 RHBDD2Q6NTF9 364 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 MED27Q6P2C8 311 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 FBXO42Q6P3S6 717 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 TLDC1Q6P9B6 456 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 TMIGD1Q6UXZ0 262 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 LINC00696Q6ZRV3 163 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 SHISA6Q6ZSJ9 500 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 DNAJC22Q8N4W6 341 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 AFAP1L2Q8N4X5 818 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 CAMKVQ8NCB2 501 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 CATSPER1Q8NEC5 780 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 METTL6Q8TCB7 284 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 SLC13A3Q8WWT9 602 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 L3HYPDHQ96EM0 354 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 AGAP4Q96P64 663 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 CENPKQ9BS16 269 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 TMEM79Q9BSE2 394 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 NDC1Q9BTX1 674 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 CHRNA10Q9GZZ6 450 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 C12orf65Q9H3J6 166 aaKnown RBP8.25□□□□□ -1.09
USP4-213ENST00000488520 EHD1Q9H4M9 534 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 NT5DC2Q9H857 520 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 NMRK1Q9NWW6 199 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 PCTPQ9UKL6 214 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 EMCNQ9ULC0 261 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 SNX6Q9UNH7 406 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 AP1M2Q9Y6Q5 423 aa8.25□□□□□ -1.09
USP4-213ENST00000488520 KCNE1BA0A087WTH5 132 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 A0A1B0GUH1 482 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 TRBC2A0A5B9 178 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 FEZF1A0PJY2 475 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 OR2A25A4D2G3 310 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 LRRC14BA6NHZ5 514 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 HAT1O14929 419 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 ZSCAN9O15535 394 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 NPHS1O60500 1241 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 UGDHO60701 494 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 HSPA4LO95757 839 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 B3GALT4O96024 378 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 KRT6AP02538 564 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 KRT6BP04259 564 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 STSP08842 583 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 CD63P08962 238 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SBK3P0C264 359 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SLC35G6P0C7Q6 338 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 PIM1P11309 404 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 GRK2P25098 689 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 GSTM2P28161 218 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SERPINB1P30740 379 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 AHRP35869 848 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 CASP2P42575 452 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 TSFMP43897 325 aaKnown RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 GABRA4P48169 554 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 KRT6CP48668 564 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 PKNOX1P55347 436 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SKP1P63208 163 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 CSNK1G2P78368 415 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 MEF2AQ02078 507 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 TGM3Q08188 693 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 STX3Q13277 289 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SLBPQ14493 270 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP4-213ENST00000488520 GRM7Q14831 915 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 CHI3L2Q15782 390 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 TBCCQ15814 346 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 CPSF6Q16630 551 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP4-213ENST00000488520 UNC50Q53HI1 259 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 EXOSC6Q5RKV6 272 aaKnown RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 WASHC2DQ5SRD0 308 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 IRAK1BP1Q5VVH5 260 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 YOD1Q5VVQ6 348 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 FAM180AQ6UWF9 173 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 GPRIN3Q6ZVF9 776 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 PAQR7Q86WK9 346 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 KIRREL3Q8IZU9 778 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 MFSD9Q8NBP5 474 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 ABHD11Q8NFV4 315 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 OR4K1Q8NGD4 311 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 FLVCR1-AS1Q8TAF5 88 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 PROKR1Q8TCW9 393 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 ZNF483Q8TF39 744 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 MTFMTQ96DP5 389 aaKnown RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 THOC3Q96J01 351 aaKnown RBP8.24□□□□□ -1.09
USP4-213ENST00000488520 SEC16BQ96JE7 1060 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 FAR2Q96K12 515 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 OR4K3Q96R72 315 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 TRMOQ9BU70 441 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 NTMT1Q9BV86 223 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 ELOVL6Q9H5J4 265 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 C7orf69Q9H7B7 122 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 MID1IP1Q9NPA3 183 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 ZFP64Q9NPA5 681 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 SLC22A11Q9NSA0 550 aa8.24□□□□□ -1.09
USP4-213ENST00000488520 OLAHQ9NV23 265 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms