RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TMED4Q7Z7H5 227 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 CCDC116Q8IYX3 515 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 PHOSPHO1Q8TCT1 267 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 NRG4Q8WWG1 115 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 KCNK13Q9HB14 408 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 FBXO9Q9UK97 447 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 NOP16Q9Y3C1 178 aaKnown RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 BOLA2-SMG1P6H3BVE0 249 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 GALTP07902 379 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 HLA-EP13747 358 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 MAP2K3P46734 347 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 PM20D1Q6GTS8 502 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 TMPRSS9Q7Z410 1059 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 C7orf61Q8IZ16 206 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 OR4K14Q8NGD5 310 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 SORT1Q99523 831 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 LAMP5Q9UJQ1 280 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 CAPN14A8MX76 684 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 DOC2AQ14183 400 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 IRF7Q92985 503 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 MRPL3P09001 348 aaKnown RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 VAMP1P23763 118 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 RPA4Q13156 261 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 UBXN2BQ14CS0 331 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 SPHARQ15513 63 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 ZNF648Q5T619 568 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 C1orf189Q5VU69 101 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 STUB1Q9UNE7 303 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 GRXCR1A8MXD5 290 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 ZNF878C9JN71 531 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 CAPN3P20807 821 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 PTNP21246 168 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 ERP29P30040 261 aaKnown RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 STK19P49842 368 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 OC90Q02509 493 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 ODF4Q2M2E3 257 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 RAB12Q6IQ22 244 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 CHRDL2Q6WN34 429 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 HMGB4Q8WW32 186 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 AIFM2Q9BRQ8 373 aa15.78■□□□□ 0.12
COL7A1-210ENST00000487017 MRPS17Q9Y2R5 130 aaKnown RBP15.78■□□□□ 0.12
COL7A1-210ENST00000487017 TRIM64A6NGJ6 449 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 TBPL1P62380 186 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 POU6F2P78424 691 aaPredicted RBP15.77■□□□□ 0.12
COL7A1-210ENST00000487017 GPM6BQ13491 265 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 DPY19L3Q6ZPD9 716 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 Q8N402 240 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 PGAP3Q96FM1 320 aaPredicted RBP15.77■□□□□ 0.12
COL7A1-210ENST00000487017 SRRDQ9UH36 339 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 MAB21L2Q9Y586 359 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 MYH11P35749 1972 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 MYH3P11055 1940 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 MYH7P12883 1935 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 LOC100509620A0A075B734 347 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 DISC1C4P0D8 188 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 B4GALT2O60909 372 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 DCKP27707 260 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 ERVPABLB-1P60509 514 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 VAMP2P63027 116 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 C22orf42Q6IC83 251 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 RANBP10Q6VN20 620 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 TSPYL5Q86VY4 417 aaPredicted RBP15.77■□□□□ 0.12
COL7A1-210ENST00000487017 FCAMRQ8WWV6 532 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 IGSF21Q96ID5 467 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 GTPBP2Q9BX10 602 aaKnown RBP15.77■□□□□ 0.12
COL7A1-210ENST00000487017 BEX2Q9BXY8 128 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 LHPPQ9H008 270 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 BEX1Q9HBH7 125 aa15.77■□□□□ 0.12
COL7A1-210ENST00000487017 ZFR2Q9UPR6 939 aaKnown RBP15.77■□□□□ 0.12
COL7A1-210ENST00000487017 SOBPA7XYQ1 873 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 ALPPL2P10696 532 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 MAD2L1BPQ15013 274 aaPredicted RBP15.77■□□□□ 0.11
COL7A1-210ENST00000487017 CCBE1Q6UXH8 406 aaPredicted RBP15.77■□□□□ 0.11
COL7A1-210ENST00000487017 UBE2Q1Q7Z7E8 422 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 PLA2G15Q8NCC3 412 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.77■□□□□ 0.11
COL7A1-210ENST00000487017 TTTY10Q9BZA0 68 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 SARDHQ9UL12 918 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 PCDHGA2Q9Y5H1 932 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 A0A1W2PQ45 241 aaPredicted RBP15.77■□□□□ 0.11
COL7A1-210ENST00000487017 A0A1W2PQY0 241 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 UNC119BA6NIH7 251 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 M0R233 179 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 HOXA11P31270 313 aaPredicted RBP15.77■□□□□ 0.11
COL7A1-210ENST00000487017 HMGCLP35914 325 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 SDHAF3Q9NRP4 125 aa15.77■□□□□ 0.11
COL7A1-210ENST00000487017 HYKKA2RU49 373 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 KHNYNO15037 678 aaKnown RBP15.76■□□□□ 0.11
COL7A1-210ENST00000487017 ZNF623O75123 536 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 PRSS48Q7RTY5 328 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 SERINC5Q86VE9 423 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 TRIM43Q96BQ3 446 aaPredicted RBP15.76■□□□□ 0.11
COL7A1-210ENST00000487017 SECISBP2Q96T21 854 aaKnown RBP15.76■□□□□ 0.11
COL7A1-210ENST00000487017 OR2B2Q9GZK3 357 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 SDR39U1Q9NRG7 319 aaPredicted RBP15.76■□□□□ 0.11
COL7A1-210ENST00000487017 APOL3O95236 402 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 SHMT2P34897 504 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.76■□□□□ 0.117e-7■■□□□ 12.1
COL7A1-210ENST00000487017 RPL13AP3Q6NVV1 102 aa15.76■□□□□ 0.11
COL7A1-210ENST00000487017 PIAS4Q8N2W9 510 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms