RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PTPMT1Q8WUK0 201 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-203ENST00000474056 MTFMTQ96DP5 389 aaKnown RBP16.71■□□□□ 0.27
UPF3A-203ENST00000474056 MTBPQ96DY7 904 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 C5orf34Q96MH7 638 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 TMEM216Q9P0N5 145 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 PCNX1Q96RV3 2341 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 IQANK1A0A1B0GTG1 560 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 FOXE1O00358 373 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 PPP6CO00743 305 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 EEDO75530 441 aaKnown RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 ITGA10O75578 1167 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 SLC25A12O75746 678 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 DDAH2O95865 285 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 SP1P08047 785 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 TRHRP34981 398 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 CYB561P49447 251 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 ARFIP1P53367 373 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 TNFRSF17Q02223 184 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 CUL3Q13618 768 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 SERTAD2Q14140 314 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 TEX35Q5T0J7 233 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 C18orf63Q68DL7 685 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 SLC25A25Q6KCM7 469 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 GPR180Q86V85 440 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 HORMAD2Q8N7B1 307 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 ZNF321PQ8N8H1 164 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 OR4F6Q8NGB9 312 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 ZNF483Q8TF39 744 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 MZB1Q8WU39 189 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 SREK1Q8WXA9 508 aaKnown RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 DAZLQ92904 295 aaKnown RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 RPF2Q9H7B2 306 aaKnown RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 TRIM45Q9H8W5 580 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 L2HGDHQ9H9P8 463 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 LIN28AQ9H9Z2 209 aaKnown RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 PSD3Q9NYI0 1048 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 PSMC3IPQ9P2W1 217 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-203ENST00000474056 ATG4BQ9Y4P1 393 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 CLCA3PQ9Y6N3 262 aa16.7■□□□□ 0.26
UPF3A-203ENST00000474056 A0A0A6YYD5 115 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 A1L4Q6 167 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 ASPDHA6ND91 283 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 WIPF3A6NGB9 483 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 TMEM200CA6NKL6 621 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 C17orf105B2RV13 164 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 GOLGA8RI6L899 631 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 CDK2AP1O14519 115 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 TMPRSS11DO60235 418 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 TSPAN8P19075 237 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 HLCSP50747 726 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 CDH13P55290 713 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 IGLV3-21P80748 117 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-203ENST00000474056 MAPKAPK3Q16644 382 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 GGTA1PQ4G0N0 100 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 C4orf17Q53FE4 359 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 TTC19Q6DKK2 380 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-203ENST00000474056 HIST2H2BCQ6DN03 193 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 MRM1Q6IN84 353 aaKnown RBP16.69■□□□□ 0.26
UPF3A-203ENST00000474056 GFRALQ6UXV0 394 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 C16orf47Q6ZP98 133 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-203ENST00000474056 MILR1Q7Z6M3 343 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 MORN4Q8NDC4 146 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 OR14A16Q8NHC5 309 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 FRMD6Q96NE9 622 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 CCDC77Q9BR77 488 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 C1QTNF3Q9BXJ4 246 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 OR8D2Q9GZM6 311 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 DDX31Q9H8H2 851 aaKnown RBP16.69■□□□□ 0.26
UPF3A-203ENST00000474056 MS4A12Q9NXJ0 267 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 FETUBQ9UGM5 382 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 TBK1Q9UHD2 729 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 PHF11Q9UIL8 331 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 PPT2Q9UMR5 302 aa16.69■□□□□ 0.26
UPF3A-203ENST00000474056 UTP20O75691 2785 aaKnown RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 LRRTM2O43300 516 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 NME2P1O60361 137 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 ZFAND5O76080 213 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 UNC5CO95185 931 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 GBAP04062 536 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 STSP08842 583 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 TNNI3P19429 210 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 NME2P22392 152 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 BUD31P41223 144 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 FOLH1Q04609 750 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 FRG2Q64ET8 278 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 LETMD1Q6P1Q0 360 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 NUDT13Q86X67 352 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 SLC2A12Q8TD20 617 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 FRG2BQ96QU4 278 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 SERPINI1Q99574 410 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 TSPAN10Q9H1Z9 355 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 LYARQ9NX58 379 aaKnown RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 SEC14L3Q9UDX4 400 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 PLEKHB1Q9UF11 243 aaPredicted RBP16.68■□□□□ 0.26
UPF3A-203ENST00000474056 ZNF225Q9UK10 706 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 ASB4Q9Y574 426 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 DNAJC13O75165 2243 aa16.68■□□□□ 0.26
UPF3A-203ENST00000474056 WASHC1A8K0Z3 465 aa16.67■□□□□ 0.26
UPF3A-203ENST00000474056 PROM1O43490 865 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms