RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 IGHV3-20A0A0C4DH32 117 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 TCRBV16S1A1N1A0A5B0 115 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 SYNDIG1LA6NDD5 238 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 MASP2O00187 686 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 KLF11O14901 512 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 PIP5K1BO14986 540 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 PCDH7O60245 1069 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 LDB3O75112 727 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 SNNO75324 88 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 PRKRAO75569 313 aaKnown RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 DNAJB5O75953 348 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 AIFM1O95831 613 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 NR2F6P10588 404 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 NR1D1P20393 614 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 TIA1P31483 386 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 CCL11P51671 97 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 OR4D2P58180 307 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 ACTN3Q08043 901 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 STX4Q12846 297 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 AIMP2Q13155 320 aaKnown RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 KIAA0040Q15053 153 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 NR6A1Q15406 480 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 SFT2D3Q587I9 215 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 HSP90B2PQ58FF3 399 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 NDUFAF5Q5TEU4 345 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 CLNKQ7Z7G1 428 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 C7orf57Q8NEG2 295 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 OR2T11Q8NH01 316 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 FAM76AQ8TAV0 307 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF75CPQ92670 426 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 ANKRD9Q96BM1 317 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 LPAR4Q99677 370 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 WDR77Q9BQA1 342 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 ARHGAP9Q9BRR9 750 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 TUBB6Q9BUF5 446 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF160Q9HCG1 818 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 PFDN4Q9NQP4 134 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 INTS9Q9NV88 658 aaKnown RBP11.21□□□□□ -0.61
VPS13D-204ENST00000469054 RIC8BQ9NVN3 520 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 C1orf109Q9NX04 203 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 EPG5Q9HCE0 2579 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 GNG14A0A1W2PPG7 69 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 GLOD5A6NK44 160 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 WASHC1A8K0Z3 465 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 TGFBR3LH3BV60 316 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 LSM1O15116 133 aaKnown RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 FGF17O60258 216 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 SEC22BO75396 215 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 SKAP2O75563 359 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 MYO1DO94832 1006 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 SEC24DO94855 1032 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 ANXA4P09525 319 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 ICAM2P13598 275 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PPP2R1BP30154 601 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 POLE2P56282 527 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 SOX8P57073 446 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 OCRLQ01968 901 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 ID2Q02363 134 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 SERTAD2Q14140 314 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 XKR7Q5GH72 579 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PAPD4Q6PIY7 484 aaKnown RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 OR4N5Q8IXE1 308 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PARP9Q8IXQ6 854 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 DYDC1Q8WWB3 177 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 UCN3Q969E3 161 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 WBP1Q96G27 269 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 IMMP1LQ96LU5 166 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 C3orf30Q96M34 536 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 FAIM2Q9BWQ8 316 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 EBPLQ9BY08 206 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 ALOXE3Q9BYJ1 711 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 MED4Q9NPJ6 270 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PNPOQ9NVS9 261 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 POLR3HQ9Y535 204 aaPredicted RBP11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PCDHA9Q9Y5H5 950 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 PKD1L2Q7Z442 2459 aa11.2□□□□□ -0.62
VPS13D-204ENST00000469054 ATP6AP2A0A1C7CYW4 349 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 C1orf226A1L170 272 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 A6NL46 340 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 PGRMC2O15173 223 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 ATP6AP2O75787 350 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 CEACAM4O75871 244 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 GPR75O95800 540 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 IFNA16P05015 189 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 ITGA3P26006 1051 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 GSTM5P46439 218 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 TAS2R50P59544 299 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 IGLV3-21P80748 117 aaPredicted RBP11.19□□□□□ -0.62
VPS13D-204ENST00000469054 FOLH1Q04609 750 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 Q0VFX4 171 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 BIKQ13323 160 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 PDCD2Q16342 344 aaPredicted RBP11.19□□□□□ -0.62
VPS13D-204ENST00000469054 GALNTL6Q49A17 601 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 ATP6AP1LQ52LC2 224 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 RFTN2Q52LD8 501 aaPredicted RBP11.19□□□□□ -0.62
VPS13D-204ENST00000469054 PLAG1Q6DJT9 500 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 OR52E8Q6IFG1 317 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 NOXRED1Q6NXP6 359 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 GALNT16Q8N428 558 aa11.19□□□□□ -0.62
VPS13D-204ENST00000469054 FDCSPQ8NFU4 85 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms