RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KLHL42Q9P2K6 505 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CTSFQ9UBX1 484 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 ZNF282Q9UDV7 671 aaPredicted RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 CDC14AQ9UNH5 594 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CRYL1Q9Y2S2 319 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 TMA7Q9Y2S6 64 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 MAU2Q9Y6X3 613 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 LRBAP50851 2863 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 SPTBP11277 2137 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 ANKRD17O75179 2603 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 FAM237BA0A1B0GVD1 139 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 KRT87PA6NCN2 255 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ANKUB1A6NFN9 424 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 WIPF3A6NGB9 483 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 SDR42E2A6NKP2 422 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ARHGEF33A8MVX0 844 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 H0YGG7 62 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 TXNDC9O14530 226 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 PCDH17O14917 1159 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 AVILO75366 819 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 USP1O94782 785 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 SPDEFO95238 335 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CCNDBP1O95273 360 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 HPP00738 406 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 KRT14P02533 472 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 EIF2S1P05198 315 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 ENO3P13929 434 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 MTHFD2P13995 350 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CXCR5P32302 372 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 RPA3P35244 121 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 TSFMP43897 325 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 PNLIPRP1P54315 467 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ARF3P61204 181 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 ABATP80404 500 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 RELAQ04206 551 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 PRDX1Q06830 199 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 KLC1Q07866 573 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 GPS1Q13098 491 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 DHX34Q14147 1143 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 TRIP13Q15645 432 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 PRTGQ2VWP7 1150 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ACSBG2Q5FVE4 666 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 GARNL3Q5VVW2 1013 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ATG9BQ674R7 924 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 B3GNTL1Q67FW5 361 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 CASC4Q6P4E1 433 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 SUSD1Q6UWL2 747 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CAND1Q86VP6 1230 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 PAQR7Q86WK9 346 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 LRRC8AQ8IWT6 810 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 LMNTD2Q8IXW0 634 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 RASGEF1CQ8N431 466 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 METTL27Q8N6F8 245 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 ST6GALNAC3Q8NDV1 305 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 OR11G2Q8NGC1 345 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 OR56A1Q8NGH5 318 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 DNAJB14Q8TBM8 379 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ASB10Q8WXI3 467 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 KCNJ9Q92806 393 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 FAM136AQ96C01 138 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 THOC3Q96J01 351 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 CABS1Q96KC9 395 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 C10orf90Q96M02 699 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 PKP4Q99569 1192 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 MRI1Q9BV20 369 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ACAT2Q9BWD1 397 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CCDC68Q9H2F9 335 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 XAB2Q9HCS7 855 aaKnown RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 C14orf105Q9NVL8 296 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 GALPQ9UBC7 116 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 ERRFI1Q9UJM3 462 aaPredicted RBP6.87□□□□□ -1.31
USP54-208ENST00000461520 COMMD10Q9Y6G5 202 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 FER1L5A0AVI2 2057 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CRYBG3Q68DQ2 2970 aa6.87□□□□□ -1.31
USP54-208ENST00000461520 CELSR2Q9HCU4 2923 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 NSG1A0A0A6YYJ2 146 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 IGKV1-8A0A0C4DH67 115 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ZCWPW2A0A1B0GU75 182 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 A0A1W2PQ72 361 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 CTAGE9A4FU28 777 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 MARCH11A6NNE9 402 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 E7ENX8 843 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 GFYI3L273 518 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 EIF3FO00303 357 aaPredicted RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 MAP2K7O14733 419 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ZBTB14O43829 449 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ALOX12BO75342 701 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 PRKD3O94806 890 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 CLDN1O95832 211 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 SLC16A8O95907 504 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 LDLRP01130 860 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 ELANEP08246 267 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 MPC1LP0DKB6 136 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 RAP2AP10114 183 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 EZRP15311 586 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 FBLP22087 321 aaKnown RBP6.86□□□□□ -1.31
USP54-208ENST00000461520 FDXRP22570 491 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 CXCR2P25025 360 aa6.86□□□□□ -1.31
USP54-208ENST00000461520 DCTP40126 519 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms