RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 NANOGP8Q6NSW7 305 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SPESP1Q6UW49 350 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CERS6Q6ZMG9 384 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SPATA19Q7Z5L4 167 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SERINC5Q86VE9 423 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 FOXRED2Q8IWF2 684 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DHX40Q8IX18 779 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TDHQ8IZJ6 230 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GCNT2Q8N0V5 402 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 STK40Q8N2I9 435 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 KDM8Q8N371 416 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CLIP4Q8N3C7 705 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CADM2Q8N3J6 435 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GUF1Q8N442 669 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 LRRC18Q8N456 261 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 COMMD1Q8N668 190 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PLA2G15Q8NCC3 412 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 U2AF1L4Q8WU68 220 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ASB11Q8WXH4 323 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 THAP4Q8WY91 577 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 IRF7Q92985 503 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 BTBD9Q96Q07 612 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GAL3ST4Q96RP7 486 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TWNKQ96RR1 684 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CDCA3Q99618 268 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RTKNQ9BST9 563 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TUBB2BQ9BVA1 445 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 HAPLN2Q9GZV7 340 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 POLR3FQ9H1D9 316 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ESRP2Q9H6T0 727 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RNF146Q9NTX7 359 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PRMT7Q9NVM4 692 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TEX10Q9NXF1 929 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TUBE1Q9UJT0 475 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DBR1Q9UK59 544 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC45A2Q9UMX9 530 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RHBDD3Q9Y3P4 386 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0C4DFX4 3053 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A1W2PRB8 838 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GMNCA6NCL1 334 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DDTLA6NHG4 134 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ASB14A6NK59 587 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ARPC5O15511 151 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 HUS1O60921 280 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 F10P00742 488 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CCNB1P14635 433 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PNLIPP16233 465 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 EGR1P18146 543 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A6P19224 532 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CCNOP22674 350 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CALML3P27482 149 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GGT5P36269 586 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC1A2P43004 574 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 YAP1P46937 504 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 KCNJ1P48048 391 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 C21orf59P57076 290 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CSNK1G2P78368 415 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 CNTN2Q02246 1040 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MBTD1Q05BQ5 628 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GRIK2Q13002 908 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RAB32Q13637 225 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF273Q14593 569 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MTF1Q14872 753 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 OXA1LQ15070 435 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MED22Q15528 200 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GXYLT1Q4G148 440 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 COQ5Q5HYK3 327 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 LDLRAP1Q5SW96 308 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 LRRC66Q68CR7 880 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RPL13AP3Q6NVV1 102 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RFWD3Q6PCD5 774 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM65Q6PI78 240 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MOXD1Q6UVY6 613 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ZBTB49Q6ZSB9 765 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM26Q6ZUK4 368 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 MTSS1LQ765P7 747 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TIPARPQ7Z3E1 657 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 POLNQ7Z5Q5 900 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SPRED1Q7Z699 444 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SATL1Q86VE3 508 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PLD3Q8IV08 490 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 WDTC1Q8N5D0 677 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 POMGNT2Q8NAT1 580 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM35BQ8NCS4 154 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 PAPD5Q8NDF8 572 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 GPRC5AQ8NFJ5 357 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 OR52N2Q8NGI0 321 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SETD6Q8TBK2 473 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 NETO1Q8TDF5 533 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 ELP5Q8TE02 316 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 SLAMF9Q96A28 289 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TCEAL4Q96EI5 215 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 C5orf30Q96GV9 206 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 NECTIN4Q96NY8 510 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TAAR6Q96RI8 345 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 LBHD1Q9BQE6 289 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 HINT2Q9BX68 163 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 TLR10Q9BXR5 811 aa4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 RBM38Q9H0Z9 239 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-209ENST00000456975 DNTTIP1Q9H147 329 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms