RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 MYBPC3Q14896 1274 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 ZNF630Q2M218 657 aaPredicted RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 MPP4Q96JB8 637 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 NEUROD4Q9HD90 331 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 LHX9Q9NQ69 397 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 WARS2Q9UGM6 360 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 B4DGG1 531 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 GUCY1B2O75343 617 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 HPRP00739 348 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 SLC35G6P0C7Q6 338 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 OR12D1P0DN82 309 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 HIST1H1TP22492 207 aaPredicted RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 DGKEP52429 567 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 GPR18Q14330 331 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 DEFB134Q4QY38 66 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 SHQ1Q6PI26 577 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 DENND6BQ8NEG7 585 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 MS4A6EQ96DS6 147 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 SLC35G5Q96KT7 338 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 SPATA9Q9BWV2 254 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 KIR3DX1Q9H7L2 352 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 LIN28AQ9H9Z2 209 aaKnown RBP12.97□□□□□ -0.33
CLK3-203ENST00000454830 SLC35C2Q9NQQ7 365 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 C1GALT1Q9NS00 363 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 IRAK4Q9NWZ3 460 aa12.97□□□□□ -0.33
CLK3-203ENST00000454830 PRAMEF10O60809 474 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 TNFRSF21O75509 655 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 OLR1P78380 273 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 LASP1Q14847 261 aaKnown RBP12.96□□□□□ -0.33
CLK3-203ENST00000454830 KCTD21Q4G0X4 260 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 FGD3Q5JSP0 725 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 GPR153Q6NV75 609 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 CYP4Z1Q86W10 505 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 TTC29Q8NA56 475 aaPredicted RBP12.96□□□□□ -0.33
CLK3-203ENST00000454830 CREB3L4Q8TEY5 395 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 TTYH1Q9H313 450 aaPredicted RBP12.96□□□□□ -0.33
CLK3-203ENST00000454830 LMAN1LQ9HAT1 526 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 SIRT5Q9NXA8 310 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 CLCA2Q9UQC9 943 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 SNX5Q9Y5X3 404 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 J3KTA2 159 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 RFX4Q33E94 735 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 TMEM35AQ53FP2 167 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 REEP3Q6NUK4 255 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 ARMC6Q6NXE6 501 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 KCTD8Q6ZWB6 473 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 SRFBP1Q8NEF9 429 aaKnown RBP12.96□□□□□ -0.33
CLK3-203ENST00000454830 OR2L5Q8NG80 312 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 CNIH3Q8TBE1 160 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 PROX1Q92786 737 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 DNASE1L2Q92874 299 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 SLC22A18Q96BI1 424 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 TMEM19Q96HH6 336 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 COL21A1Q96P44 957 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 ANKRA2Q9H9E1 313 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 HRASLS2Q9NWW9 162 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 FBXL21Q9UKT6 434 aa12.96□□□□□ -0.33
CLK3-203ENST00000454830 CELA2BP08218 269 aaPredicted RBP12.96□□□□□ -0.34
CLK3-203ENST00000454830 HOXB6P17509 224 aaKnown RBP12.96□□□□□ -0.34
CLK3-203ENST00000454830 AGXTP21549 392 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 POU1F1P28069 291 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 RBBP4Q09028 425 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 ABHD17CQ6PCB6 329 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 DEF8Q6ZN54 512 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 TRIM69Q86WT6 500 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 UTP15Q8TED0 518 aaKnown RBP12.96□□□□□ -0.34
CLK3-203ENST00000454830 MBOAT4Q96T53 435 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 DMTF1Q9Y222 760 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 PCDHGB3Q9Y5G1 929 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 PCDHGA4Q9Y5G9 962 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 CABIN1Q9Y6J0 2220 aa12.96□□□□□ -0.34
CLK3-203ENST00000454830 DNAH14Q0VDD8 3507 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 NOL3O60936 208 aaKnown RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 ZNF888P0CJ79 500 aaPredicted RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 ATP5A1P25705 553 aaKnown RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 MAOBP27338 520 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 FMO3P31513 532 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 DAPP51397 102 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 MVDP53602 400 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 KCNJ10P78508 379 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 ID2Q02363 134 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 CD47Q08722 323 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 CCINQ13939 588 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 COL13A1Q5TAT6 717 aaPredicted RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 OR4N5Q8IXE1 308 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 TMEFF1Q8IYR6 380 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 PIK3C3Q8NEB9 887 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 GOT1L1Q8NHS2 421 aaPredicted RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 CCDC3Q9BQI4 270 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 DGCR6LQ9BY27 220 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 PITHD1Q9GZP4 211 aaPredicted RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 NT5DC2Q9H857 520 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 DDX31Q9H8H2 851 aaKnown RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 CAPN10Q9HC96 672 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 C2orf42Q9NWW7 574 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 SEC14L3Q9UDX4 400 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 APOBEC3BQ9UH17 382 aaKnown RBP12.95□□□□□ -0.34
CLK3-203ENST00000454830 BLOC1S6Q9UL45 172 aa12.95□□□□□ -0.34
CLK3-203ENST00000454830 PRAMEF26H0Y7S4 382 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms