RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ZNF214Q9UL59 606 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 FABP7O15540 132 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 KAT7O95251 611 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 SLC25A14O95258 325 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 ADAP00813 363 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 C8AP07357 584 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 RAB13P51153 203 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 MRPS10P82664 201 aaKnown RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 SLC25A52Q3SY17 297 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 RHOUQ7L0Q8 258 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 OR10K1Q8NGX5 313 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 ELP4Q96EB1 424 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 LMAN2LQ9H0V9 348 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 CALML5Q9NZT1 146 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3DA0A087WVF3 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3IA0A087WXS9 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 A0A087WZY1 265 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3EA0A087X179 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3KA0A087X1G2 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3FA6NER0 549 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 TISP43B9A030 160 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3LB9A6J9 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 E7EQ34 232 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 GOSR2O14653 212 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 BUD23O43709 281 aaKnown RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 ADRB2P07550 413 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3HP0C7X1 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 AKT2P31751 481 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 DLX5P56178 289 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3GQ6DHY5 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3CQ6IPX1 549 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TRMT10BQ6PF06 316 aaKnown RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 SLC36A4Q6YBV0 504 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 TBC1D3Q8IZP1 549 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 OR2AP1Q8NGE2 309 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 KCTD13Q8WZ19 329 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 PRR11Q96HE9 360 aaPredicted RBP12.79□□□□□ -0.36
USP40-208ENST00000450966 APOLD1Q96LR9 279 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 WDR45Q9Y484 360 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 ATG4BQ9Y4P1 393 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 RIPK3Q9Y572 518 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 ZNF780BQ9Y6R6 833 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 C10orf71Q711Q0 1435 aa12.79□□□□□ -0.36
USP40-208ENST00000450966 SMIM30A4D0T7 59 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 RDH16O75452 317 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 SCGB1D2O95969 90 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 SPATA31C1P0DKV0 1188 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CXCR4P61073 352 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CAP1Q01518 475 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 VARS2Q5ST30 1063 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 BRAT1Q6PJG6 821 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 GPR135Q8IZ08 494 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 SMAP2Q8WU79 429 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 ZFPM2Q8WW38 1151 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 TMPRSS11EQ9UL52 423 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 MAGEB4O15481 346 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 TACSTD2P09758 323 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 RHOQP17081 205 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CD247P20963 164 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 TNFSF8P32971 234 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 DLSTP36957 453 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 KCNJ5P48544 419 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 RPS14P62263 151 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 TAF10Q12962 218 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 RAB33AQ14088 237 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 OR10R2Q8NGX6 335 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CORO2AQ92828 525 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 TSSK6Q9BXA6 273 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 ARL5CA6NH57 179 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CAPN14A8MX76 684 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 SCAMP3O14828 347 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 IRAK2O43187 625 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 TGOLN2O43493 480 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 STSP08842 583 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CD63P08962 238 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 GCAP28676 217 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 ETV6P41212 452 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 NDUFA6P56556 154 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 PDZK1IP1Q13113 114 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 EOGTQ5NDL2 527 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 KIAA1161Q6NSJ0 714 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 FAM83HQ6ZRV2 1179 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 CHST9Q7L1S5 443 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 LYSMD3Q7Z3D4 306 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 NLRP8Q86W28 1048 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 OR4L1Q8NH43 312 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CASTOR1Q8WTX7 329 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 ZDHHC1Q8WTX9 485 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 CAMK1GQ96NX5 476 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 SULT4A1Q9BR01 284 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 C14orf166Q9Y224 244 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 DCNP07585 359 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 HLA-DMAP28067 261 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 MAGEA11P43364 429 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 PROX2Q3B8N5 592 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 PPP1R26Q5T8A7 1209 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 CNIH2Q6PI25 160 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 METAP1DQ6UB28 335 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms