RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SCELO95171 688 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 NME2P22392 152 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 CPN2P22792 545 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 CNTFP26441 200 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 GPR143P51810 404 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 CASP6P55212 293 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 SLAMF1Q13291 335 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 GTF2H2Q13888 395 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 OR4C11Q6IEV9 310 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 GTF2H2CQ6P1K8 395 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 GOLGA7Q7Z5G4 137 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 PLD6Q8N2A8 252 aaKnown RBP12.49□□□□□ -0.41
VCX3A-202ENST00000398729 MORN4Q8NDC4 146 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 OR14A16Q8NHC5 309 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 KIF18AQ8NI77 898 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 ISL2Q96A47 359 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 RGMAQ96B86 450 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 GPR137Q96N19 417 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 MTERF1Q99551 399 aaKnown RBP12.49□□□□□ -0.41
VCX3A-202ENST00000398729 IPPKQ9H8X2 491 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 DMRT3Q9NQL9 472 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 MS4A12Q9NXJ0 267 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 SUCOQ9UBS9 1254 aaKnown RBP12.49□□□□□ -0.41
VCX3A-202ENST00000398729 VTI1BQ9UEU0 232 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF223Q9UK11 482 aaPredicted RBP12.49□□□□□ -0.41
VCX3A-202ENST00000398729 TMCO1Q9UM00 188 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 KLF13Q9Y2Y9 288 aaPredicted RBP12.49□□□□□ -0.41
VCX3A-202ENST00000398729 MAP1AP78559 2803 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 A0A087WUV0 522 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 LRRC14BA6NHZ5 514 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 PRSS44E7EML9 344 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 NPIPA5E9PKD4 350 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 H0YIV9 168 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 LDB3O75112 727 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 SIX3O95343 332 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 COL6A2P12110 1019 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 TNNI3P19429 210 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 PTX3P26022 381 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ECHS1P30084 290 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ARL1P40616 181 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 MAGEA12P43365 314 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 SSR4P51571 173 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ARFIP1P53367 373 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 RPS13P62277 151 aaKnown RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 CPSF6Q16630 551 aaKnown RBP eCLIP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 TSNAXIP1Q2TAA8 658 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF227Q86WZ6 799 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 CYP4Z2PQ8N1L4 340 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 RNF175Q8N4F7 328 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 PTGR2Q8N8N7 351 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ATP6V1E2Q96A05 226 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 MAGED4Q96JG8 741 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 SCYL1Q96KG9 808 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 TSPAN10Q9H1Z9 355 aaPredicted RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF358Q9NW07 568 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 PHF11Q9UIL8 331 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF180Q9UJW8 692 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 NPIPA1Q9UND3 350 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 YARS2Q9Y2Z4 477 aaKnown RBP12.48□□□□□ -0.41
VCX3A-202ENST00000398729 NAV3Q8IVL0 2385 aa12.48□□□□□ -0.41
VCX3A-202ENST00000398729 MYOCOSA0A1B0GUC4 107 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 C17orf105B2RV13 164 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 KLRC4-KLRK1H3BQV0 150 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 STX16-NPEPL1H3BU86 382 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 CCL21O00585 134 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 PLPP1O14494 284 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 STX16O14662 325 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 SLC19A2O60779 497 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 SMIM24O75264 130 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 WISP2O76076 250 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 CLDN9O95484 217 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 COX7A2P14406 83 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF24P17028 368 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 TLX1P31314 330 aaPredicted RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 CA7P43166 264 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 ID2Q02363 134 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 MTFR2Q6P444 385 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 HSDL2Q6YN16 418 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 GPR180Q86V85 440 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 GPALPP1Q8IXQ4 340 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 ZCCHC7Q8N3Z6 543 aaKnown RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 CPSF7Q8N684 471 aaKnown RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 CEP112Q8N8E3 955 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 L3MBTL4Q8NA19 623 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 POGLUT1Q8NBL1 392 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 UHMK1Q8TAS1 419 aaKnown RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 PTPMT1Q8WUK0 201 aaPredicted RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 ANKRD9Q96BM1 317 aaPredicted RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 PHF21BQ96EK2 531 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 SORBS1Q9BX66 1292 aaKnown RBP12.47□□□□□ -0.41
VCX3A-202ENST00000398729 OR8D2Q9GZM6 311 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 MYOTQ9UBF9 498 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 XPR1Q9UBH6 696 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 SH3BGRL2Q9UJC5 107 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 ERVK-11Q9UQG0 969 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 RNF11Q9Y3C5 154 aa12.47□□□□□ -0.41
VCX3A-202ENST00000398729 A8MVJ9 347 aa12.46□□□□□ -0.41
VCX3A-202ENST00000398729 TRIM49D1C9J1S8 452 aa12.46□□□□□ -0.41
VCX3A-202ENST00000398729 ASNA1O43681 348 aa12.46□□□□□ -0.41
VCX3A-202ENST00000398729 DYRK3O43781 588 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms