RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SCARB2Q14108 478 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 UGCGQ16739 394 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 ZCCHC23Q6ZST2 131 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 TMEM163Q8TC26 289 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 MAPK15Q8TD08 544 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 WDR34Q96EX3 536 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 FZD4Q9ULV1 537 aa4.74□□□□□ -1.65
PCDH9-201ENST00000377861 AOAHP28039 575 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC35A2P78381 396 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CHRNEQ04844 493 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 LASP1Q14847 261 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 PSMG4Q5JS54 123 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZNF613Q6PF04 617 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 LDB1Q86U70 411 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 PRRT1Q99946 306 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 MRPL45Q9BRJ2 306 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZNF195O14628 629 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 FLRT2O43155 660 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 EMC8O43402 210 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 POU2F1P14859 743 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RBM39Q14498 530 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SSX2Q16385 188 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZNF628Q5EBL2 1059 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 HS3ST5Q8IZT8 346 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SMARCD2Q92925 531 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 TPD52L3Q96J77 140 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 EBF4Q9BQW3 602 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 TMEM106CQ9BVX2 250 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 WRAP73Q9P2S5 460 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 TNFRSF10CO14798 259 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CREB1P16220 341 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 MTAPQ13126 283 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 KIR2DS3Q14952 304 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ALX3O95076 343 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC10A7Q0GE19 358 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CHIT1Q13231 466 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GTF2IRD2BQ6EKJ0 949 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ADCK2Q7Z695 626 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GTF2IRD2Q86UP8 949 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GHDCQ8N2G8 530 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ANKLE1Q8NAG6 615 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SMAP2Q8WU79 429 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ASB15Q8WXK1 588 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 PIAS1O75925 651 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CYP4B1P13584 511 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SP2Q02086 613 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GLB1L2Q8IW92 636 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC29A1Q99808 456 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 MTHFD1P11586 935 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ADGRF3Q8IZF5 1079 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZSCAN1Q8NBB4 408 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC46A1Q96NT5 459 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CCR10P46092 362 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RGNQ15493 299 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 STX12Q86Y82 276 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SYS1Q8N2H4 156 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 PINK1Q9BXM7 581 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ASPNQ9BXN1 380 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 IGSF5Q9NSI5 407 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ASB1Q9Y576 335 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 DISC1C4P0D8 188 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 M0R233 179 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 S100A6P06703 90 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SIM2Q14190 667 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 FAM20CQ8IXL6 584 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GPR78Q96P69 363 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RHBDL2Q9NX52 303 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZNF670-ZNF695F2Z2N8 137 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 IL7P13232 177 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ETV1P50549 477 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RPS21P63220 83 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RHEBQ15382 184 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GAREM2Q75VX8 874 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 PNLDC1Q8NA58 520 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC5A2P31639 672 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 NOXA1Q86UR1 476 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 ZNF354BQ96LW1 612 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CREBL2O60519 120 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 RALGDSQ12967 914 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SFT2D3Q587I9 215 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SLC22A12Q96S37 553 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 A0A0U1RQJ8 604 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 VSTM5A8MXK1 200 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 LRRN3E7EW58 273 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GTPBP1O00178 669 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 SPINT3P49223 89 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 GARNL3Q5VVW2 1013 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 AGTRAPQ6RW13 159 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 DND1Q8IYX4 353 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 OR56A3Q8NH54 315 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 LRRN3Q9H3W5 708 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 NOP16Q9Y3C1 178 aaKnown RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 BTN3A3O00478 584 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 OR2B3O76000 313 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 TMEM145Q8NBT3 493 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 MED9Q9NWA0 146 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 HS3ST4Q9Y661 456 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 CYP4F2P78329 520 aa4.73□□□□□ -1.65
PCDH9-201ENST00000377861 TOMM34Q15785 309 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-201ENST00000377861 WSCD2Q2TBF2 565 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms