RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 THOC6Q86W42 341 aaKnown RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 DCUN1D3Q8IWE4 304 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 NAGSQ8N159 534 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 TCAIMQ8N3R3 496 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SLC25A45Q8N413 288 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SNX31Q8N9S9 440 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 LINC01555Q8NAE3 123 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 FAM46DQ8NEK8 389 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 OR52E1Q8NGJ3 308 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 PPP4R1Q8TF05 950 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 C10orf82Q8WW14 230 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 NEIL1Q96FI4 390 aaPredicted RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 ZNF382Q96SR6 550 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 EBF4Q9BQW3 602 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 TRMOQ9BU70 441 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 TUBB1Q9H4B7 451 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 MVB12BQ9H7P6 319 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 ERVMER34-1Q9H9K5 563 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 DNAJC11Q9NVH1 559 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SPHK1Q9NYA1 384 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 OPTCQ9UBM4 332 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 ZFP69BQ9UJL9 534 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 ICKQ9UPZ9 632 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SLC22A14Q9Y267 594 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 RNF11Q9Y3C5 154 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 TIMM22Q9Y584 194 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 USH1CQ9Y6N9 552 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 ZNF318Q5VUA4 2279 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 CUL9Q8IWT3 2517 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 PCM1Q15154 2024 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 DNAH14Q0VDD8 3507 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PRR5-ARHGAP8B1AHC4 643 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 H0Y3Z8 333 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 NDUFAB1O14561 156 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 AZIN1O14977 448 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 AQP9O43315 295 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PTP4A3O75365 173 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PIAS2O75928 621 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 ESRRBO95718 433 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 XRCC1P18887 633 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 CD22P20273 847 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 ABCD3P28288 659 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PEBP1P30086 187 aaKnown RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 PKLRP30613 574 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 BLKP51451 505 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 AQP5P55064 265 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PKNOX1P55347 436 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 UCP3P55916 312 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 MAZP56270 477 aaKnown RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 KRTAP10-2P60368 255 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 NAA20P61599 178 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TBPL1P62380 186 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 AP2B1P63010 937 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 IRX1P78414 480 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 NFATC3Q12968 1075 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TUBB3Q13509 450 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 MAPKAPK3Q16644 382 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 DEFB133Q30KQ1 61 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TTC23LQ6PF05 361 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 EPGNQ6UW88 154 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 GPRIN3Q6ZVF9 776 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 LRRC70Q7Z2Q7 622 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 C17orf82Q86X59 251 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 SYT12Q8IV01 421 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 SLC44A2Q8IWA5 706 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 CLYBLQ8N0X4 340 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 SFRP1Q8N474 314 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 ZNF548Q8NEK5 533 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 NUDT10Q8NFP7 164 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 OR4F6Q8NGB9 312 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 CPT1CQ8TCG5 803 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 MAGEC3Q8TD91 643 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 SLC37A2Q8TED4 501 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 ATL1Q8WXF7 558 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 GRAMD1AQ96CP6 724 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 MED8Q96G25 268 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 NUDT11Q96G61 164 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 C3orf30Q96M34 536 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 NTMT1Q9BV86 223 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 KRTAP17-1Q9BYP8 105 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TWSG1Q9GZX9 223 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 KIR3DX1Q9H7L2 352 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 BCO1Q9HAY6 547 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 IL21RQ9HBE5 538 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 EML4Q9HC35 981 aaKnown RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 SLC40A1Q9NP59 571 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 ABCF3Q9NUQ8 709 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 MRPS18AQ9NVS2 196 aaKnown RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 SPATA7Q9P0W8 599 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 SPASTQ9UBP0 616 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 SLC45A2Q9UMX9 530 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 FIS1Q9Y3D6 152 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PTGDR2Q9Y5Y4 395 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 R4GN57 208 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TP53BP1Q12888 1972 aaPredicted RBP3.39□□□□□ -1.87
MCF2-202ENST00000370573 ADAMTS9Q9P2N4 1935 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 TMEM131Q92545 1883 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 A0A087WWL8 130 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 A0A0G2JND7 137 aa3.39□□□□□ -1.87
MCF2-202ENST00000370573 PABPN1LA6NDY0 278 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms