RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GABRB1P18505 474 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 TAS2R38P59533 333 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 REEP5Q00765 189 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 PUM1Q14671 1186 aaKnown RBP eCLIP20.72■□□□□ 0.91
SHMT1-202ENST00000352886 PDGFRLQ15198 375 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 EGFLAMQ63HQ2 1017 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 AQP11Q8NBQ7 271 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 SLC38A4Q969I6 547 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 EXOSC8Q96B26 276 aaKnown RBP20.72■□□□□ 0.91
SHMT1-202ENST00000352886 LHX9Q9NQ69 397 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 FKBP14Q9NWM8 211 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 THAP10Q9P2Z0 257 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-202ENST00000352886 OR1A2Q9Y585 309 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 EFCAB9A8MZ26 197 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 KCNC4Q03721 635 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 FAM46CQ5VWP2 391 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 LINC00299Q6ZSB3 139 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 DENND6BQ8NEG7 585 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 RAB8BQ92930 207 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 TMEM19Q96HH6 336 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 ALPK1Q96QP1 1244 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 PCBD2Q9H0N5 130 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 NEUROD4Q9HD90 331 aa20.72■□□□□ 0.91
SHMT1-202ENST00000352886 MBNL1Q9NR56 388 aaKnown RBP20.72■□□□□ 0.91
SHMT1-202ENST00000352886 MID1O15344 667 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 OR1F1O43749 312 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 TMPRSS11DO60235 418 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 SH3BP5O60239 455 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 CBLP22681 906 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-202ENST00000352886 NUDT13Q86X67 352 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 TAGAPQ8N103 731 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 S100ZQ8WXG8 99 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 A4GALTQ9NPC4 353 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 TEX10Q9NXF1 929 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-202ENST00000352886 SLC6A14Q9UN76 642 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 DUSP12Q9UNI6 340 aa20.71■□□□□ 0.91
SHMT1-202ENST00000352886 WBP11Q9Y2W2 641 aaKnown RBP20.71■□□□□ 0.91
SHMT1-202ENST00000352886 M0R082 166 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 KMOO15229 486 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 ATP6V1G1O75348 118 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 GRK3P35626 688 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 WASP42768 502 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 CTSKP43235 329 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 LIM2P55344 173 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 PTGES3Q15185 160 aaKnown RBP20.7■□□□□ 0.91
SHMT1-202ENST00000352886 SPDYE7PQ495Y7 208 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 AGBL4Q5VU57 503 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 PLD3Q8IV08 490 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 LINC01555Q8NAE3 123 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 QRFPRQ96P65 431 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 PSD2Q9BQI7 771 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 WDR37Q9Y2I8 494 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 SNX11Q9Y5W9 270 aa20.7■□□□□ 0.91
SHMT1-202ENST00000352886 FFAR1O14842 300 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 NDUFS4O43181 175 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 TBX19O60806 448 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 B4GALT2O60909 372 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 GASTP01350 101 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 STSP08842 583 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 PCBP4P57723 403 aaKnown RBP20.7■□□□□ 0.9
SHMT1-202ENST00000352886 TIGD6Q17RP2 521 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 C6orf120Q7Z4R8 191 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 NLGN4XQ8N0W4 816 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 NATD1Q8N6N6 113 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 ZHX1-C8orf76Q96EF9 292 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 BTBD2Q9BX70 525 aa20.7■□□□□ 0.9
SHMT1-202ENST00000352886 NMNAT1Q9HAN9 279 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-202ENST00000352886 SIRT3Q9NTG7 399 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-202ENST00000352886 DNMT3AQ9Y6K1 912 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-202ENST00000352886 GOLGA4Q13439 2230 aaKnown RBP20.7■□□□□ 0.9
SHMT1-202ENST00000352886 A0A0G2JN53 185 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 FAM227AF5H4B4 570 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 FUCA1P04066 466 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 CLK1P49759 484 aaKnown RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 TANGO2Q6ICL3 276 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 KLHL17Q6TDP4 642 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 ADCK2Q7Z695 626 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 STX19Q8N4C7 294 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 APOBEC4Q8WW27 367 aaKnown RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 RGMAQ96B86 450 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 SLIRPQ9GZT3 109 aaKnown RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 OSGEPL1Q9H4B0 414 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 FBXO8Q9NRD0 319 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 KCND3Q9UK17 655 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 LCMT2O60294 686 aaKnown RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 KAT7O95251 611 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 ACP5P13686 325 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 SERPINB1P30740 379 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 GJA4P35212 333 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 TEKQ02763 1124 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 COLEC12Q5KU26 742 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 GPR32P1Q8NGA4 272 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 OR6Q1Q8NGQ2 317 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 UCN3Q969E3 161 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 C12orf66Q96MD2 445 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 FERD3LQ96RJ6 166 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 RSPO3Q9BXY4 272 aaPredicted RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 TEX101Q9BY14 249 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 WDR26Q9H7D7 661 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms