RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 OR52N2Q8NGI0 321 aa21.34■■□□□ 1.01
TRIM28-202ENST00000341753 FAM25AB3EWG3 89 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 FAM25CB3EWG5 89 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 FAM25GB3EWG6 89 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 PITPNM1O00562 1244 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 RNASET2O00584 256 aaKnown RBP21.33■■□□□ 1.01
TRIM28-202ENST00000341753 MSL3P1P0C860 447 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 PRSS53Q2L4Q9 553 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 CBARPQ8N350 705 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-202ENST00000341753 NLGN4YQ8NFZ3 816 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-202ENST00000341753 ENKURQ8TC29 256 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 CHTF18Q8WVB6 975 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 SCAMP4Q969E2 229 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 TSSK6Q9BXA6 273 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 TXNL4BQ9NX01 149 aaKnown RBP21.33■■□□□ 1.01
TRIM28-202ENST00000341753 ANAPC1Q9H1A4 1944 aa21.33■■□□□ 1.01
TRIM28-202ENST00000341753 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.33■■□□□ 1
TRIM28-202ENST00000341753 SERTM1A2A2V5 107 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 ZNF821O75541 412 aaPredicted RBP21.33■■□□□ 1
TRIM28-202ENST00000341753 ATP1B2P14415 290 aaPredicted RBP21.33■■□□□ 1
TRIM28-202ENST00000341753 TIA1P31483 386 aaKnown RBP eCLIP21.33■■□□□ 1
TRIM28-202ENST00000341753 OPRD1P41143 372 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 CTSOP43234 321 aaPredicted RBP21.33■■□□□ 1
TRIM28-202ENST00000341753 PREPP48147 710 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 PUM1Q14671 1186 aaKnown RBP eCLIP21.33■■□□□ 1
TRIM28-202ENST00000341753 SLC35F1Q5T1Q4 408 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 RETSATQ6NUM9 610 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 AGTRAPQ6RW13 159 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 RDH10Q8IZV5 341 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 WDFY2Q96P53 400 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 TOR4AQ9NXH8 423 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 CARD8Q9Y2G2 431 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 CLCA3PQ9Y6N3 262 aa21.33■■□□□ 1
TRIM28-202ENST00000341753 MPZL2O60487 215 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 ZNF770Q6IQ21 691 aaPredicted RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 PRR23CQ6ZRP0 262 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 CREB3L4Q8TEY5 395 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 SNAPC3Q92966 411 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 WRAP53Q9BUR4 548 aaKnown RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 NDUFB11Q9NX14 153 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 DKK3Q9UBP4 350 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 PLEKHB1Q9UF11 243 aaPredicted RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 NDRG2Q9UN36 371 aaKnown RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 GREM1O60565 184 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 IFNW1P05000 195 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 IFI30P13284 250 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 SERPINA4P29622 427 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 SDC2P34741 201 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 P2RX3P56373 397 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 C21orf58P58505 322 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 EEF1A2Q05639 463 aaKnown RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 ZNF800Q2TB10 664 aaPredicted RBP eCLIP21.32■■□□□ 15e-8■□□□□ 10.9
TRIM28-202ENST00000341753 USP30Q70CQ3 517 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 SIX5Q8N196 739 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 ATP6V1C2Q8NEY4 427 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 GRPEL2Q8TAA5 225 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 ZNF296Q8WUU4 475 aaPredicted RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 OVCA2Q8WZ82 227 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 SLC25A46Q96AG3 418 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 RIPOR3Q96MK2 946 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 C2orf49Q9BVC5 232 aaPredicted RBP21.32■■□□□ 1
TRIM28-202ENST00000341753 MND1Q9BWT6 205 aa21.32■■□□□ 1
TRIM28-202ENST00000341753 DOCK6Q96HP0 2047 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 MYL12BO14950 172 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 OR10H3O60404 316 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 APEX1P27695 318 aaKnown RBP21.31■■□□□ 1
TRIM28-202ENST00000341753 AP1S2P56377 157 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 QPRTQ15274 297 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TPRG1Q6ZUI0 275 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TMPRSS11BQ86T26 416 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 RBM45Q8IUH3 476 aaKnown RBP21.31■■□□□ 1
TRIM28-202ENST00000341753 WDR48Q8TAF3 677 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 CLP1Q92989 425 aaKnown RBP21.31■■□□□ 1
TRIM28-202ENST00000341753 REV1Q9UBZ9 1251 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 IQCMA0A1B0GVH7 501 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TGFB1P01137 390 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TRAPPC2P0DI81 140 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TRAPPC2BP0DI82 140 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 PSKH1P11801 424 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 PIPP12273 146 aaPredicted RBP21.31■■□□□ 1
TRIM28-202ENST00000341753 TNNI3P19429 210 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 CSNK1DP48730 415 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 HMGA2P52926 109 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 NFE2L1Q14494 772 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 FLYWCH1Q4VC44 716 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 GRHL2Q6ISB3 625 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TRIM69Q86WT6 500 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 NANOGP1Q8N7R0 232 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 REPS1Q96D71 796 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 TMEM169Q96HH4 297 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 HHIPL1Q96JK4 782 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 NELL2Q99435 816 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 UCK2Q9BZX2 261 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 REEP4Q9H6H4 257 aa21.31■■□□□ 1
TRIM28-202ENST00000341753 SLC35F4A4IF30 521 aa21.3■■□□□ 1
TRIM28-202ENST00000341753 EIF3FO00303 357 aaPredicted RBP21.3■■□□□ 1
TRIM28-202ENST00000341753 ICMTO60725 284 aa21.3■■□□□ 1
TRIM28-202ENST00000341753 SOD2P04179 222 aa21.3■■□□□ 1
TRIM28-202ENST00000341753 MPC1LP0DKB6 136 aa21.3■■□□□ 1
TRIM28-202ENST00000341753 RHCEP18577 417 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms