RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF789Q5FWF6 425 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 NDUFAF5Q5TEU4 345 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 RAET1LQ5VY80 246 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 REEP3Q6NUK4 255 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 RPTNQ6XPR3 784 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 C10orf82Q8WW14 230 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 GABRG3Q99928 467 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 C1QTNF2Q9BXJ5 285 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 OR51I1Q9H343 314 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 TESMINQ9Y4I5 508 aa9.69□□□□□ -0.86
USP54-201ENST00000339859 SMIM31A0A1B0GVY4 71 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 HCRTR2O43614 444 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PKLRP30613 574 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PRDX1Q06830 199 aaKnown RBP9.68□□□□□ -0.86
USP54-201ENST00000339859 TMPRSS11AQ6ZMR5 421 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 NANOGNBQ7Z5D8 188 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 NLRP8Q86W28 1048 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 KAT2AQ92830 837 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 BMFQ96LC9 184 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 OR52B2Q96RD2 323 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 FAM129BQ96TA1 746 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ZPBPQ9BS86 351 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 THSD1Q9NS62 852 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ADAMTS6Q9UKP5 1117 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 hCG_2039718K7EN88 272 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 KPNA4O00629 521 aaPredicted RBP9.68□□□□□ -0.86
USP54-201ENST00000339859 TPST2O60704 377 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 RAP2AP10114 183 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PVRP15151 417 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CD46P15529 392 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CSNK2BP67870 215 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 FOXK1P85037 733 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ATG14Q6ZNE5 492 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 OR52J3Q8NH60 311 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ZNF480Q8WV37 535 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 TRPV5Q9NQA5 729 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 SLC35C2Q9NQQ7 365 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ZNF28P17035 718 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CTSKP43235 329 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 NOVA1P51513 510 aaKnown RBP9.68□□□□□ -0.86
USP54-201ENST00000339859 RAB38P57729 211 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 RBM15BQ8NDT2 890 aaKnown RBP9.68□□□□□ -0.86
USP54-201ENST00000339859 OR4K1Q8NGD4 311 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 OR14A16Q8NHC5 309 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 R4GN57 208 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 A0A1W2PRG6 482 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 SIGLEC6O43699 453 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 VNN2O95498 520 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CSTAP01040 98 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CTSLP07711 333 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PRDX3P30048 256 aaKnown RBP9.68□□□□□ -0.86
USP54-201ENST00000339859 EPHA4P54764 986 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 NPTX1Q15818 432 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 TIMM50Q3ZCQ8 353 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP54-201ENST00000339859 GARNL3Q5VVW2 1013 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 COMMD6Q7Z4G1 85 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PDPRQ8NCN5 879 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 RNF31Q96EP0 1072 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 TMEM5Q9Y2B1 443 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 SMCHD1A6NHR9 2005 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 EFCAB10A6NFE3 127 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 OR12D1P0DN82 309 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 BCKDHAP12694 445 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 NRF1Q16656 503 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ABRAXAS1Q6UWZ7 409 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 RFLNAQ6ZTI6 216 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ZNF595Q8IYB9 648 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 PTERQ96BW5 349 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 RNFT2Q96EX2 444 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 ZBTB26Q9HCK0 441 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 CCNB1IP1Q9NPC3 277 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 IKZF2Q9UKS7 526 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP54-201ENST00000339859 MED31Q9Y3C7 131 aa9.68□□□□□ -0.86
USP54-201ENST00000339859 MYOCOSA0A1B0GUC4 107 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 NPIPA2E9PIF3 369 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 NPIPA3F8WFD2 350 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 YY2O15391 372 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 CHST10O43529 356 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TYROBPO43914 113 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 PSIP1O75475 530 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 ANPEPP15144 967 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ATP6V1B1P15313 513 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 NCK1P16333 377 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 CLCN2P51788 898 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ZIK1Q3SY52 487 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 METRNLQ641Q3 311 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 DPY19L2P1Q6NXN4 242 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FGD2Q7Z6J4 655 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ZNF548Q8NEK5 533 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 METTL2AQ96IZ6 378 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 MS4A4EQ96PG1 132 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 NTMT1Q9BV86 223 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 PCDHGB7Q9Y5F8 929 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TRBV11-1A0A0K0K1C0 115 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR5K3A6NET4 321 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 H0YGG7 62 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TNFRSF10AO00220 468 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 RTCAO00442 366 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms