RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ATAD1Q8NBU5 361 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 C11orf65Q8NCR3 313 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 DUSP18Q8NEJ0 188 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM46DQ8NEK8 389 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 HEXA-AS1Q9H8Q6 139 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC28A3Q9HAS3 691 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 IL17CQ9P0M4 197 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MBD1Q9UIS9 605 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 ZFP37Q9Y6Q3 630 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 KCNE1BA0A087WTH5 132 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SH3D21A4FU49 640 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PRRG1O14668 218 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CR2P20023 1033 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CD9P21926 228 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 INPP1P49441 399 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SGSHP51688 502 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CRYBB1P53674 252 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CACNG1Q06432 222 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 GALEQ14376 348 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 IGSF11Q5DX21 431 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MZT2BQ6NZ67 158 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 PLEKHH3Q7Z736 793 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MEX3DQ86XN8 651 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 GPR156Q8NFN8 814 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 OR11H7Q8NGC8 314 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 CEP76Q8TAP6 659 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MS4A3Q96HJ5 214 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 TRAF4Q9BUZ4 470 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MND1Q9BWT6 205 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SPNS1Q9H2V7 528 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC32A1Q9H598 525 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 ZFP64Q9NPA5 681 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM8A1Q9UBU6 413 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 RAB23Q9ULC3 237 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 MAP4K5Q9Y4K4 846 aa12.84□□□□□ -0.35
CCDC88C-201ENST00000331194 HEPACAM2A8MVW5 462 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 DVL2O14641 736 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CHP2O43745 196 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 ORC5O43913 435 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 IL1AP01583 271 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 TACR2P21452 398 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CTGFP29279 349 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CCT3P49368 545 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 EPHA5P54756 1037 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 BRAT1Q6PJG6 821 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 UNC5DQ6UXZ4 953 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 LIPIQ6XZB0 460 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF730Q6ZMV8 503 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 C16orf59Q7L2K0 433 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF366Q8N895 744 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 GPR137Q96N19 417 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CDH10Q9Y6N8 788 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 MYO10Q9HD67 2058 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 SHISA3A0PJX4 238 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 C1orf226A1L170 272 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 GAPDHSO14556 408 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 ETHE1O95571 254 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 F11P03951 625 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 GKP32189 559 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 OPRD1P41143 372 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 YBEYP58557 167 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CDC42EP1Q00587 391 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 SEC23BQ15437 767 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 KLHL22Q53GT1 634 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 TAGAPQ8N103 731 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 CPA6Q8N4T0 437 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 ZC4H2Q9NQZ6 224 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 TVP23BQ9NYZ1 205 aa12.83□□□□□ -0.36
CCDC88C-201ENST00000331194 PITPNM1O00562 1244 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 FFAR1O14842 300 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CASKO14936 926 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TLX2O43763 284 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 DPM1O60762 260 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 MPC2O95563 127 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 HRGP04196 525 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 ANXA5P08758 320 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF7P17097 686 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 LSM11P83369 360 aaKnown RBP eCLIP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 FABP5Q01469 135 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CAP1Q01518 475 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 SRSF11Q05519 484 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 GPRC6AQ5T6X5 926 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 FRG2Q64ET8 278 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 GDPGP1Q6ZNW5 385 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF655Q8N720 491 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 OR4A15Q8NGL6 344 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 KCTD7Q96MP8 289 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 FRG2BQ96QU4 278 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM43Q9BTV4 400 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 MS4A7Q9GZW8 240 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 EXO1Q9UQ84 846 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 SOX18P35713 384 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 STK19P49842 368 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CPT1AP50416 773 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 MAP2K6P52564 334 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 BCL2L1Q07817 233 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 C2orf80Q0P641 193 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 EXOSC2Q13868 293 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms