RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NTSR1P30989 418 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 VIPR1P32241 457 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 CTHP32929 405 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 KCNC1P48547 511 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 Q5BKY6 102 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 TMEM184AQ6ZMB5 413 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 CERS6Q6ZMG9 384 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 ZNF621Q6ZSS3 439 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 PTCHD4Q6ZW05 846 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 TRAPPC5Q8IUR0 188 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 HMGB4Q8WW32 186 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 DNASE1L2Q92874 299 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 TMEM203Q969S6 136 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 C1GALT1C1Q96EU7 318 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 CRELD1Q96HD1 420 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 NARS2Q96I59 477 aaKnown RBP10.44□□□□□ -0.74
LSM3-201ENST00000306024 CDX2Q99626 313 aaPredicted RBP10.44□□□□□ -0.74
LSM3-201ENST00000306024 C8orf33Q9H7E9 229 aaPredicted RBP10.44□□□□□ -0.74
LSM3-201ENST00000306024 UBQLN2Q9UHD9 624 aa10.44□□□□□ -0.74
LSM3-201ENST00000306024 NPEPPSL1A6NEC2 478 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 UPK1AO00322 258 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ANKRD28O15084 1053 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SHOXO15266 292 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 LDB2O43679 373 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 PLATP00750 562 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 C1QBP02746 253 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 POU2F1P14859 743 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 MAT2AP31153 395 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 HSPA14Q0VDF9 509 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ZNF776Q68DI1 518 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 TMEM179BQ7Z7N9 219 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 GDPD1Q8N9F7 314 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SMRP1Q8NCR6 262 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SCRN2Q96FV2 425 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 C1QTNF7Q9BXJ2 289 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 NUSAP1Q9BXS6 441 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 MCCC2Q9HCC0 563 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 NLE1Q9NVX2 485 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 THUMPD1Q9NXG2 353 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 ABCG2Q9UNQ0 655 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SLC27A6Q9Y2P4 619 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 A0A0G2JMP0 313 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 NPIPB15A6NHN6 443 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 H0YC42 278 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SSNA1O43805 119 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 MMP20O60882 483 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 OGNP20774 298 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 HMGCLP35914 325 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 NUP62P37198 522 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 PIK3CBP42338 1070 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 CBLBQ13191 982 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 KRT33BQ14525 404 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 GPR68Q15743 365 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 TBCEQ15813 527 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 BAK1Q16611 211 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SHQ1Q6PI26 577 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 KRT74Q7RTS7 529 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 KIAA1958Q8N8K9 716 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 MDGA1Q8NFP4 955 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 PJA1Q8NG27 643 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 OR8J3Q8NGG0 315 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 FAM3CQ92520 227 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 SCAMP4Q969E2 229 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 L3HYPDHQ96EM0 354 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 PPP3R2Q96LZ3 170 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 WACQ9BTA9 647 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 BRD7Q9NPI1 651 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 MARCH4Q9P2E8 410 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 SLC23A1Q9UHI7 598 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 MYO10Q9HD67 2058 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ISM1B1AKI9 464 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 DSCR3O14972 297 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 GUCA1CO95843 209 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 CSNK1DP48730 415 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ITGA1P56199 1179 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 HNRNPA0Q13151 305 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 SPANXN4Q5MJ08 99 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 KANK2Q63ZY3 851 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 FAM92BQ6ZTR7 304 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 CILP2Q8IUL8 1156 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 AP3S1Q92572 193 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ZNF566Q969W8 418 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 OTUB1Q96FW1 271 aaPredicted RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 EGLN2Q96KS0 407 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 ZCCHC2Q9C0B9 1178 aaKnown RBP10.43□□□□□ -0.74
LSM3-201ENST00000306024 B3GNT4Q9C0J1 378 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 KLHL21Q9UJP4 597 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 PATJQ8NI35 1801 aa10.43□□□□□ -0.74
LSM3-201ENST00000306024 A0A1W2PP55 124 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 A0A1W2PPC1 479 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 OTOL1A6NHN0 477 aaPredicted RBP10.42□□□□□ -0.74
LSM3-201ENST00000306024 WASHC1A8K0Z3 465 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 B4DXG7 233 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 WWP2O00308 870 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 WNT9AO14904 365 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 SLC31A1O15431 190 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 RGS14O43566 566 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 FGF4P08620 206 aa10.42□□□□□ -0.74
LSM3-201ENST00000306024 HIST1H2AGP0C0S8 130 aaPredicted RBP10.42□□□□□ -0.74
LSM3-201ENST00000306024 CLEC2LP0C7M8 214 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms