RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PGAM2P15259 253 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 KCNC1P48547 511 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SPINT3P49223 89 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ELAVL3Q14576 367 aaKnown RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 RTP2Q5QGT7 225 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ULK3Q6PHR2 472 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 KDELC1Q6UW63 502 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 PLEKHG7Q6ZR37 379 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 LRRTM3Q86VH5 581 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ZNF227Q86WZ6 799 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 DRAXINQ8NBI3 349 aaPredicted RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 PTERQ96BW5 349 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 TTYH2Q9BSA4 534 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SLC2A11Q9BYW1 496 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 LRRN3Q9H3W5 708 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 IL17CQ9P0M4 197 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ZNF69Q9UC07 566 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 CARD8Q9Y2G2 431 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 CITO14578 2027 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 EMC8O43402 210 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 CHP2O43745 196 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 KIAA0513O60268 411 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ADH1BP00325 375 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 TCEAL6Q6IPX3 200 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 RPL13AP3Q6NVV1 102 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SAMD12Q8N8I0 201 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SUN3Q8TAQ9 357 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 UTP4Q969X6 686 aaKnown RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 SLC29A1Q99808 456 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 ZDHHC7Q9NXF8 308 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SPEF1Q9Y4P9 236 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SDK1Q7Z5N4 2213 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 DNAJC25-GNG10A0A024R161 153 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 FXYD6-FXYD2A0A087WZ82 144 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 C1orf226A1L170 272 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 MBLAC1A4D2B0 266 aaPredicted RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 I3L521 148 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 CDKN1CP49918 316 aaPredicted RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 TRAM1Q15629 374 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 TBRG1Q3YBR2 411 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 CDKL4Q5MAI5 379 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 PPP2R2DQ66LE6 453 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 PRSS48Q7RTY5 328 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 VTCN1Q7Z7D3 282 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SPAG16Q8N0X2 631 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 DTWD1Q8N5C7 304 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 F2RL3Q96RI0 385 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 GAS2L1Q99501 681 aaPredicted RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 SLC12A9Q9BXP2 914 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 FXYD6Q9H0Q3 95 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 IRF2BPLQ9H1B7 796 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 XKR8Q9H6D3 395 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 MGAT4AQ9UM21 535 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 GABRQQ9UN88 632 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SCAMP2O15127 329 aaKnown RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 FOXD2O60548 495 aaPredicted RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 ADAP00813 363 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 RHOP08100 348 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 DRD2P14416 443 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 DCTP40126 519 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 GCGRP47871 477 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 GSTM4Q03013 218 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 EIF4HQ15056 248 aaKnown RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 XKRXQ6PP77 449 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 NXPE4Q6UWF7 544 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 MRPL10Q7Z7H8 261 aaKnown RBP10.31□□□□□ -0.76
CD44-201ENST00000263398 SCD5Q86SK9 330 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 NUP43Q8NFH3 380 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 OR52N2Q8NGI0 321 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 FANK1Q8TC84 345 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 TRIB2Q92519 343 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 RFT1Q96AA3 541 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 BCL7BQ9BQE9 202 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SMURF1Q9HCE7 757 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 TMEM181Q9P2C4 612 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 SPO11Q9Y5K1 396 aa10.31□□□□□ -0.76
CD44-201ENST00000263398 KDM4BO94953 1096 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 ZNF865P0CJ78 1059 aaPredicted RBP10.3□□□□□ -0.76
CD44-201ENST00000263398 GP1BBP13224 206 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 ETFAP13804 333 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 RPS3P23396 243 aaKnown RBP eCLIP10.3□□□□□ -0.76
CD44-201ENST00000263398 VAMP1P23763 118 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 HSD11B1P28845 292 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 MAP2K3P46734 347 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 PPP5CP53041 499 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 ID2Q02363 134 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 PMS2P3Q13401 168 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 UBXN2BQ14CS0 331 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 SCGB2B2Q4G0G5 96 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 PAGE3Q5JUK9 113 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 ALKBH2Q6NS38 261 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 LETMD1Q6P1Q0 360 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 CCBE1Q6UXH8 406 aaPredicted RBP10.3□□□□□ -0.76
CD44-201ENST00000263398 THAP6Q8TBB0 222 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 NSMAFQ92636 917 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 TMEM125Q96AQ2 219 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 FAM83CQ9BQN1 747 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 SEC61A2Q9H9S3 476 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 NUDT15Q9NV35 164 aa10.3□□□□□ -0.76
CD44-201ENST00000263398 MTMR10Q9NXD2 777 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms