RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HES7Q9BYE0 225 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 DEFB126Q9BYW3 111 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PANK2Q9BZ23 570 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ACPTQ9BZG2 426 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC39A8Q9C0K1 460 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 UBA5Q9GZZ9 404 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZBP1Q9H171 429 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 OR10A4Q9H209 315 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SNX25Q9H3E2 840 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 C10orf88Q9H8K7 445 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NMUR1Q9HB89 426 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GPN1Q9HCN4 374 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 XAB2Q9HCS7 855 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 VNN3Q9NY84 501 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NKIRAS2Q9NYR9 191 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CLIC5Q9NZA1 410 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ADAM22Q9P0K1 906 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TMEM9Q9P0T7 183 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ARMCX1Q9P291 453 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TXNDC16Q9P2K2 825 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NFKBIL1Q9UBC1 381 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 POLKQ9UBT6 870 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MLXQ9UH92 298 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 BAIAP2L1Q9UHR4 511 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GPR132Q9UNW8 380 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 AGTPBP1Q9UPW5 1226 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MOKQ9UQ07 419 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PA2G4Q9UQ80 394 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 NIP7Q9Y221 180 aaKnown RBP eCLIP0.29□□□□□ -2.36
VPS35-212ENST00000640313 PLEKHA6Q9Y2H5 1048 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RPH3AQ9Y2J0 694 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 NSG2Q9Y328 171 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 COLEC10Q9Y6Z7 277 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PFASO15067 1338 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RNF123Q5XPI4 1314 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RALGAPA1Q6GYQ0 2036 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TRAV18A0A075B6X5 111 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TRAV9-2A0A087WT02 112 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 A0A087X0K7 114 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TEX48A0A1B0GUV7 120 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ATP6AP2A0A1C7CYW4 349 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 A0A1W2PPW3 197 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SH3PXD2BA1X283 911 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FAM149AA5PLN7 773 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 HTR3EA5X5Y0 456 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SYNDIG1LA6NDD5 238 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 OR5H15A6NDH6 313 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TRIM49BA6NDI0 452 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZSCAN5CA6NGD5 496 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 IGLON5A6NGN9 336 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FRG2CA6NGY1 282 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 EPOPA6NHQ4 379 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 YDJCA8MPS7 323 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 C17orf51A8MQB3 221 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF487B1APH4 448 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 E7ENQ6 273 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 E9PAM4 449 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 H7C0S8 307 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SAP18O00422 153 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 INPP4BO15327 924 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 IPO8O15397 1037 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 B4GAT1O43505 415 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SCO2O43819 266 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PLOD3O60568 738 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SRPX2O60687 465 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 DIAPH2O60879 1101 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PGLSO95336 258 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PDGFBP01127 241 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 PIGRP01833 764 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 MT-ND1P03886 318 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 GBAP04062 536 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 QDPRP09417 244 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CCDC175P0C221 793 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 OR9G9P0C7N8 305 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 P0C879 139 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF853P0CG23 659 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SP9P0CG40 484 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ADORA3P0DMS8 318 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 UMPSP11172 480 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ODC1P11926 461 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 IFNAR1P17181 557 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 IGFBP5P24593 272 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CTNNA2P26232 953 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SSTR1P30872 391 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 IL2RGP31785 369 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CETN2P41208 172 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 MATKP42679 507 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 MATR3P43243 847 aaKnown RBP eCLIP0.28□□□□□ -2.36
VPS35-212ENST00000640313 MTIF2P46199 727 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 IER3P46695 156 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SLC1A6P48664 564 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FHITP49789 147 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TNFSF10P50591 281 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CCR4P51679 360 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TKTL1P51854 596 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RIDAP52758 137 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 IST1P53990 364 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ADARP55265 1226 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 PEX3P56589 373 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RPL27P61353 136 aaKnown RBP0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms