RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 KIAA2013Q8IYS2 634 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 MMP21Q8N119 569 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 EFCAB3Q8N7B9 438 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 TTC29Q8NA56 475 aaPredicted RBP11.14□□□□□ -0.63
CLN6-223ENST00000637823 FAM13CQ8NE31 585 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 OR8J3Q8NGG0 315 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 GOT1L1Q8NHS2 421 aaPredicted RBP11.14□□□□□ -0.63
CLN6-223ENST00000637823 DNAJB14Q8TBM8 379 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 ATOH1Q92858 354 aaPredicted RBP11.14□□□□□ -0.63
CLN6-223ENST00000637823 MIEF2Q96C03 454 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 ANKRD27Q96NW4 1050 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 GBP5Q96PP8 586 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 PANX1Q96RD7 426 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 SLC39A3Q9BRY0 314 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 INPP5KQ9BT40 448 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 SPRTNQ9H040 489 aaPredicted RBP11.14□□□□□ -0.63
CLN6-223ENST00000637823 SEMA4GQ9NTN9 838 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 CMTM6Q9NX76 183 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 ABCD2Q9UBJ2 740 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.14□□□□□ -0.63
CLN6-223ENST00000637823 CD300AQ9UGN4 299 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 SLC7A8Q9UHI5 535 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 PSME2Q9UL46 239 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 DAPP1Q9UN19 280 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 PCDHB14Q9Y5E9 798 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 SPACA6W5XKT8 324 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 FRYLO94915 3013 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 WDFY4Q6ZS81 3184 aa11.14□□□□□ -0.63
CLN6-223ENST00000637823 GPR179Q6PRD1 2367 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 SEC16AO15027 2179 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 A0A1W2PRB8 838 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 H3BMH7 237 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 NME4O00746 187 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 PGRMC2O15173 223 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 CASC3O15234 703 aaKnown RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 PDPK1O15530 556 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 DNAJA2O60884 412 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 OR2B3O76000 313 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 AIFM1O95831 613 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 FOLR1P15328 257 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 HOXB9P17482 250 aaPredicted RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 IL1RNP18510 177 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 CPN2P22792 545 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 PTPN6P29350 595 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 FRKP42685 505 aaPredicted RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 CDKN2CP42773 168 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 ITGA1P56199 1179 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 EEFSECP57772 596 aaKnown RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 SNRPNP63162 240 aaKnown RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 TNFRSF17Q02223 184 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 TRA2AQ13595 282 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLN6-223ENST00000637823 MPEG1Q2M385 716 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 MUM1Q2TAK8 710 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 YOD1Q5VVQ6 348 aaPredicted RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 SLC48A1Q6P1K1 146 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 TLDC1Q6P9B6 456 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 ZNF621Q6ZSS3 439 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 PRSS41Q7RTY9 318 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 PDSS2Q86YH6 399 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 HPS6Q86YV9 775 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 MSRB3Q8IXL7 192 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 GPR135Q8IZ08 494 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 CLECL1Q8IZS7 167 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 OR5P2Q8WZ92 322 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 CIDECQ96AQ7 238 aaPredicted RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 EXOSC8Q96B26 276 aaKnown RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 C10orf90Q96M02 699 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 EDEM2Q9BV94 578 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 SYNDIG1Q9H7V2 258 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 FANCEQ9HB96 536 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 SLC35C2Q9NQQ7 365 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 ACSS1Q9NUB1 689 aaPredicted RBP11.13□□□□□ -0.63
CLN6-223ENST00000637823 IRAK4Q9NWZ3 460 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 SLC25A37Q9NYZ2 338 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 VAPAQ9P0L0 249 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 NCDNQ9UBB6 729 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 CES1P1Q9UKY3 287 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 VPS4AQ9UN37 437 aa11.13□□□□□ -0.63
CLN6-223ENST00000637823 EVPLLA8MZ36 301 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 MYO1GB0I1T2 1018 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 SGK494L7N484 410 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 NVLO15381 856 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 FOXS1O43638 330 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 FOXD2O60548 495 aaPredicted RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 PDE5AO76074 875 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 NSA2O95478 260 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 LMNAP02545 664 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 GSNP06396 782 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 NR2F6P10588 404 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 HSD17B1P14061 328 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 EFNA1P20827 205 aaPredicted RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 PPIBP23284 216 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 NBL1P41271 181 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 AVPR1BP47901 424 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 ARSFP54793 590 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 MANFP55145 182 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 PCBP4P57723 403 aaKnown RBP11.12□□□□□ -0.63
CLN6-223ENST00000637823 ACY1Q03154 408 aa11.12□□□□□ -0.63
CLN6-223ENST00000637823 SPIDRQ14159 915 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms