RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KIAA2013	Q8IYS2	634 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	MMP21	Q8N119	569 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	EFCAB3	Q8N7B9	438 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	TTC29	Q8NA56	475 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	FAM13C	Q8NE31	585 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	OR8J3	Q8NGG0	315 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	GOT1L1	Q8NHS2	421 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	DNAJB14	Q8TBM8	379 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	ATOH1	Q92858	354 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	MIEF2	Q96C03	454 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	ANKRD27	Q96NW4	1050 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	GBP5	Q96PP8	586 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	PHF12	Q96QT6	1004 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	PANX1	Q96RD7	426 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC39A3	Q9BRY0	314 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	INPP5K	Q9BT40	448 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	SPRTN	Q9H040	489 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	SEMA4G	Q9NTN9	838 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	CMTM6	Q9NX76	183 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	ABCD2	Q9UBJ2	740 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	CD300A	Q9UGN4	299 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC7A8	Q9UHI5	535 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	PSME2	Q9UL46	239 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	DAPP1	Q9UN19	280 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	PCDHB14	Q9Y5E9	798 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	SPACA6	W5XKT8	324 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	FRYL	O94915	3013 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	WDFY4	Q6ZS81	3184 aa		11.14	□□□□□ -0.63
CLN6-223	ENST00000637823	GPR179	Q6PRD1	2367 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SEC16A	O15027	2179 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823		A0A1W2PRB8	838 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823		H3BMH7	237 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	NME4	O00746	187 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	PGRMC2	O15173	223 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CASC3	O15234	703 aa	Known RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	PDPK1	O15530	556 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	DNAJA2	O60884	412 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	OR2B3	O76000	313 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	AIFM1	O95831	613 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	FOLR1	P15328	257 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	HOXB9	P17482	250 aa	Predicted RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	IL1RN	P18510	177 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CPN2	P22792	545 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	PTPN6	P29350	595 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	FRK	P42685	505 aa	Predicted RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CDKN2C	P42773	168 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	ITGA1	P56199	1179 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	EEFSEC	P57772	596 aa	Known RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SNRPN	P63162	240 aa	Known RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	TNFRSF17	Q02223	184 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	MPEG1	Q2M385	716 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	MUM1	Q2TAK8	710 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC48A1	Q6P1K1	146 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	TLDC1	Q6P9B6	456 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF621	Q6ZSS3	439 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	PRSS41	Q7RTY9	318 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	PDSS2	Q86YH6	399 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	HPS6	Q86YV9	775 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	MSRB3	Q8IXL7	192 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	GPR135	Q8IZ08	494 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CLECL1	Q8IZS7	167 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	OR5P2	Q8WZ92	322 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CIDEC	Q96AQ7	238 aa	Predicted RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	EXOSC8	Q96B26	276 aa	Known RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	C10orf90	Q96M02	699 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	EDEM2	Q9BV94	578 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SYNDIG1	Q9H7V2	258 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	FANCE	Q9HB96	536 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC35C2	Q9NQQ7	365 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	ACSS1	Q9NUB1	689 aa	Predicted RBP	11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	IRAK4	Q9NWZ3	460 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC25A37	Q9NYZ2	338 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	VAPA	Q9P0L0	249 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	NCDN	Q9UBB6	729 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	CES1P1	Q9UKY3	287 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	VPS4A	Q9UN37	437 aa		11.13	□□□□□ -0.63
CLN6-223	ENST00000637823	EVPLL	A8MZ36	301 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	MYO1G	B0I1T2	1018 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	SGK494	L7N484	410 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	NVL	O15381	856 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	FOXS1	O43638	330 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	FOXD2	O60548	495 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	PDE5A	O76074	875 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	NSA2	O95478	260 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	LMNA	P02545	664 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	GSN	P06396	782 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	NR2F6	P10588	404 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	HSD17B1	P14061	328 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	EFNA1	P20827	205 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	PPIB	P23284	216 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	NBL1	P41271	181 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	AVPR1B	P47901	424 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ARSF	P54793	590 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	MANF	P55145	182 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	PCBP4	P57723	403 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ACY1	Q03154	408 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	SPIDR	Q14159	915 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms