RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ASGR2P07307 311 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 JUPP14923 745 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 C21orf33P30042 268 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 CHI3L1P36222 383 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 NUDT6P53370 316 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 CCDC157Q569K6 752 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 RUNDC3AQ59EK9 446 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 PLEKHS1Q5SXH7 462 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 CAPN13Q6MZZ7 669 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 LRRC70Q7Z2Q7 622 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 TRIM46Q7Z4K8 759 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 CYP4Z1Q86W10 505 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 ADHFE1Q8IWW8 467 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 ZNF548Q8NEK5 533 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 YIPF4Q9BSR8 244 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 MIEF1Q9NQG6 463 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 CKAP5Q14008 2032 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 SCN2AQ99250 2005 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 GFYI3L273 518 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 M0R129 80 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 POU1F1P28069 291 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 GNG2P59768 71 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 PRAMEF14Q5SWL7 426 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 FAM46CQ5VWP2 391 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 HIST2H2AA3Q6FI13 130 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 TNFAIP8L2Q6P589 184 aaPredicted RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 PEX5LQ8IYB4 626 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 IL17RDQ8NFM7 739 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 RAB8BQ92930 207 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 RHBGQ9H310 441 aa13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 YBX2Q9Y2T7 364 aaKnown RBP13.84□□□□□ -0.19
SHROOM1-208ENST00000617339 ISPDA4D126 451 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 KMOO15229 486 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 CPNE3O75131 537 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 PRKRAO75569 313 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 MED26O95402 600 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 HNRNPA1P09651 372 aaKnown RBP eCLIP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 CBSLP0DN79 551 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 CBSP35520 551 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 SLC19A1P41440 591 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 HNMTP50135 292 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 GANABQ14697 944 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 HNRNPA1L2Q32P51 320 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 NRARPQ7Z6K4 114 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 ZNF547Q8IVP9 402 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 OR6F1Q8NGZ6 308 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 UCN3Q969E3 161 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 EXOSC8Q96B26 276 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 TIFAQ96CG3 184 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 OR51E2Q9H255 320 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 SFXN1Q9H9B4 322 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 OSGIN1Q9UJX0 560 aa13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 SAMHD1Q9Y3Z3 626 aaKnown RBP13.83□□□□□ -0.19
SHROOM1-208ENST00000617339 CACNA1IQ9P0X4 2223 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 TTC28Q96AY4 2481 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 HPRP00739 348 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CCDC159P0C7I6 412 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CISD3P0C7P0 127 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC35G4P0C7Q5 338 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CD83Q01151 205 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 HSPB3Q12988 150 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 COX20Q5RI15 118 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 MED27Q6P2C8 311 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 DGLUCYQ7Z3D6 616 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 TECPR1Q7Z6L1 1165 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 OR5K1Q8NHB7 308 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 UBASH3BQ8TF42 649 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 HERVK_113Q902F9 699 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 NELL1Q92832 810 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 DTD2Q96FN9 168 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 RDH14Q9HBH5 336 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 SERHLQ9NQF3 203 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 PDP1Q9P0J1 537 aaPredicted RBP13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CLCA2Q9UQC9 943 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 PCDHGB6Q9Y5F9 930 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 AGAP14A8MT82 685 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 ISM1B1AKI9 464 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CENPBD1B2RD01 187 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 P2RY2P41231 377 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 RNF144AP50876 292 aaPredicted RBP13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 GALK2Q01415 458 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 SPANXN2Q5MJ10 180 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF544Q6NX49 715 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 PRR23CQ6ZRP0 262 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 CMTM7Q96FZ5 175 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 FAM129BQ96TA1 746 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 TMEFF2Q9UIK5 374 aaPredicted RBP13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 RAB23Q9ULC3 237 aa13.83□□□□□ -0.2
SHROOM1-208ENST00000617339 EP300Q09472 2414 aaPredicted RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ANKDD1BA6NHY2 528 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 METTL15A6NJ78 407 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SAGE2PA6NJ88 616 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 LOC110117498-PIK3R3F6TDL0 507 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 C1orf105O95561 183 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 PTTG1O95997 202 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 HOXB2P14652 356 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 NPPBP16860 134 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 DDX6P26196 483 aaKnown RBP eCLIP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms