RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 STK32CQ86UX6 486 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 ZNF555Q8NEP9 628 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 FAM162AQ96A26 154 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 FAM120BQ96EK7 910 aaKnown RBP11.14□□□□□ -0.63
VRK3-223ENST00000601341 OR2A14Q96R47 310 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 RHBGQ9H310 441 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 GAREM1Q9H706 876 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 C11orf16Q9NQ32 467 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 NLGN3Q9NZ94 848 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 PPT2Q9UMR5 302 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 USP22Q9UPT9 525 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 SAMD4AQ9UPU9 718 aaKnown RBP11.14□□□□□ -0.63
VRK3-223ENST00000601341 PCDHB14Q9Y5E9 798 aa11.14□□□□□ -0.63
VRK3-223ENST00000601341 TDRD6O60522 2096 aaKnown RBP11.14□□□□□ -0.63
VRK3-223ENST00000601341 TRBC2A0A5B9 178 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ANKDD1BA6NHY2 528 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RHPN2P1A8MT19 583 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PATE3B3GLJ2 98 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ARHGAP33O14559 1287 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SLC16A6O15403 523 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 OR1F1O43749 312 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 UBXN7O94888 489 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 CER1O95813 267 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ALPPL2P10696 532 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 AMD1P17707 334 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 NELFEP18615 380 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 GSTM2P28161 218 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RYKP34925 604 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RAD23AP54725 363 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 LPAL2Q16609 132 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SLC5A12Q1EHB4 618 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 OTUD3Q5T2D3 398 aaPredicted RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 TMEM214Q6NUQ4 689 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 ZC3H14Q6PJT7 736 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 SPESP1Q6UW49 350 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 CLVS1Q8IUQ0 354 aaPredicted RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 FAM20CQ8IXL6 584 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RNF175Q8N4F7 328 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 TTLQ8NG68 377 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 OR8J2Q8NGG1 315 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 FLVCR1-AS1Q8TAF5 88 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SAP25Q8TEE9 199 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PPP1R14BQ96C90 147 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PYURFQ96I23 114 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 GABARAPL1Q9H0R8 117 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ING2Q9H160 280 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SLC6A20Q9NP91 592 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 DMRT3Q9NQL9 472 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 FSCN3Q9NQT6 498 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 FAM118AQ9NWS6 357 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 FAM120CQ9NX05 1096 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 RAB23Q9ULC3 237 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PCDHGA5Q9Y5G8 931 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 HSPE1-MOB4S4R3N1 261 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 FEZF1A0PJY2 475 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 EVPLLA8MZ36 301 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 TNFSF14O43557 240 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 NUDT21O43809 227 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 ABCB7O75027 752 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SEC14L2O76054 403 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 EPN2O95208 641 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 GIMD1P0DJR0 217 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 TYRP1P17643 537 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SDC1P18827 310 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 CRHBPP24387 322 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PTX3P26022 381 aaPredicted RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 EPHA4P54764 986 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RPS13P62277 151 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 RAB39AQ14964 217 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 LRRC23Q53EV4 343 aaPredicted RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 ADNP2Q6IQ32 1131 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ZNF425Q6IV72 752 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ZCCHC8Q6NZY4 707 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 KCTD8Q6ZWB6 473 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 KANSL1Q7Z3B3 1105 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 CAMKMTQ7Z624 323 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SLC35F3Q8IY50 421 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 KRTCAP2Q8N6L1 136 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ANKRD53Q8N9V6 530 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 OR13F1Q8NGS4 319 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 RSC1A1Q92681 617 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ZNF566Q969W8 418 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 C12orf43Q96C57 262 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 MUS81Q96NY9 551 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 BCL7BQ9BQE9 202 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 SARGQ9BW04 601 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 TOR3AQ9H497 397 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 IKZF5Q9H5V7 419 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 PIF1Q9H611 641 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 POLR1BQ9H9Y6 1135 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 ANKMY1Q9P2S6 941 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 LRIT1Q9P2V4 623 aa11.13□□□□□ -0.63
VRK3-223ENST00000601341 TNRC6BQ9UPQ9 1833 aaKnown RBP11.13□□□□□ -0.63
VRK3-223ENST00000601341 M0QX08 132 aa11.12□□□□□ -0.63
VRK3-223ENST00000601341 RFXANKO14593 260 aa11.12□□□□□ -0.63
VRK3-223ENST00000601341 ZW10O43264 779 aa11.12□□□□□ -0.63
VRK3-223ENST00000601341 MRPS14O60783 128 aaKnown RBP11.12□□□□□ -0.63
VRK3-223ENST00000601341 NOL3O60936 208 aaKnown RBP11.12□□□□□ -0.63
VRK3-223ENST00000601341 PRKD3O94806 890 aa11.12□□□□□ -0.63
VRK3-223ENST00000601341 TGFB1P01137 390 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms