RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NDRG2Q9UN36 371 aaKnown RBP17.53■□□□□ 0.4
UPF1-210ENST00000600689 PSIP1O75475 530 aaKnown RBP17.53■□□□□ 0.4
UPF1-210ENST00000600689 CRYBB2P43320 205 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 CSNK1DP48730 415 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 SPDYE7PQ495Y7 208 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 SAXO2Q658L1 398 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 B3GLCTQ6Y288 498 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 OLIG3Q7RTU3 272 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 AMIGO1Q86WK6 493 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 FAM9CQ8IZT9 166 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 VWA5B2Q8N398 1253 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 OR4C15Q8NGM1 316 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 SLA2Q9H6Q3 261 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 LOC102723532A0A0G2JNH3 316 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 A0A1B0GVC2 190 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 A6NIN4 97 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 EIF4HQ15056 248 aaKnown RBP17.52■□□□□ 0.4
UPF1-210ENST00000600689 DEFB115Q30KQ5 88 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 ATAT1Q5SQI0 421 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 GCNT6Q5T4J0 391 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 TNFAIP8L2Q6P589 184 aaPredicted RBP17.52■□□□□ 0.4
UPF1-210ENST00000600689 TPGS1Q6ZTW0 290 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 RBM45Q8IUH3 476 aaKnown RBP17.52■□□□□ 0.4
UPF1-210ENST00000600689 UBTD2Q8WUN7 234 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 HDHD5Q9BXW7 423 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 CDH23Q9H251 3354 aa17.52■□□□□ 0.4
UPF1-210ENST00000600689 ZNF840PA6NDX5 716 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 TLX2O43763 284 aaPredicted RBP17.52■□□□□ 0.39
UPF1-210ENST00000600689 TGFB1P01137 390 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 HOXB6P17509 224 aaKnown RBP17.52■□□□□ 0.39
UPF1-210ENST00000600689 ETV6P41212 452 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 RPS13P62277 151 aaKnown RBP17.52■□□□□ 0.39
UPF1-210ENST00000600689 CDK6Q00534 326 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 FAPQ12884 760 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 PLD1Q13393 1074 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 P2RY14Q15391 338 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 OTUB1Q96FW1 271 aaPredicted RBP17.52■□□□□ 0.39
UPF1-210ENST00000600689 HTATIP2Q9BUP3 242 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 RACGAP1Q9H0H5 632 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 ALG5Q9Y673 324 aa17.52■□□□□ 0.39
UPF1-210ENST00000600689 SLC35F4A4IF30 521 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 H7C4K7 107 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PLA2G10O15496 165 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 FZD6O60353 706 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 ZNF780AO75290 641 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 RPS3P23396 243 aaKnown RBP eCLIP17.51■□□□□ 0.393e-6■■■■□ 21.7
UPF1-210ENST00000600689 OR3A3P47888 321 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 LIMK1P53667 647 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 DBPQ10586 325 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 SLC5A12Q1EHB4 618 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 MPPE1Q53F39 396 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 HECTD3Q5T447 861 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 TRIQKQ629K1 86 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 LRRC70Q7Z2Q7 622 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 C19orf18Q8NEA5 215 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 GRPEL2Q8TAA5 225 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 CCDC120Q96HB5 630 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 TSSK6Q9BXA6 273 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 CDCA4Q9BXL8 241 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 ACOXLQ9NUZ1 547 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 MCUBQ9NWR8 336 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 TMPRSS11EQ9UL52 423 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 A0A075B6Q4 140 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 TMEM202A6NGA9 273 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 FADS2P1A8MWK0 482 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 SCG5P05408 212 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PCGF2P35227 344 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 NSG1P42857 185 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PREPP48147 710 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 INPP1P49441 399 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 LSM11P83369 360 aaKnown RBP eCLIP17.51■□□□□ 0.39
UPF1-210ENST00000600689 CRTC2Q53ET0 693 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 ADGRF1Q5T601 910 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 MACC1Q6ZN28 852 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 C2orf73Q8N5S3 287 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 OR8J2Q8NGG1 315 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 C9orf43Q8TAL5 461 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 HCAR2Q8TDS4 363 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 RAB8BQ92930 207 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 SCAMP4Q969E2 229 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PHF21AQ96BD5 680 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PIP5K1AQ99755 562 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 TTLL2Q9BWV7 592 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 C3orf14Q9HBI5 128 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 GPBP1L1Q9HC44 474 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 GALNT9Q9HCQ5 603 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 RUVBL1Q9Y265 456 aaKnown RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 FAM240BA0A1B0GVZ2 78 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 OR2B3O76000 313 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 JUPP14923 745 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 IDSP22304 550 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 STK19P49842 368 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 PFN3P60673 137 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 CASP12Q6UXS9 341 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 PDZD3Q86UT5 571 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 SETD6Q8TBK2 473 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 MYLIPQ8WY64 445 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 KLHL6Q8WZ60 621 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 OR51B5Q9H339 312 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 FAM83DQ9H4H8 585 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms