RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TPSB2P20231 275 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF136P52737 540 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 KCNJ2P63252 427 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 BTN3A2P78410 334 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 CCZ1BP86790 482 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 CCZ1P86791 482 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 REEP5Q00765 189 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 DHX34Q14147 1143 aaKnown RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 CSHL1Q14406 222 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 POU4F3Q15319 338 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SF3B4Q15427 424 aaKnown RBP eCLIP9.34□□□□□ -0.912e-12■■■■□ 20.5
TRIM28-210ENST00000597618 TPSAB1Q15661 275 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 TOR1AIP1Q5JTV8 583 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SEL1L2Q5TEA6 688 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 UGT3A1Q6NUS8 523 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 POMZP3Q6PJE2 187 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 DENND6AQ8IWF6 608 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF595Q8IYB9 648 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 MYO1HQ8N1T3 1032 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 LRRC25Q8N386 305 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 VWA5B2Q8N398 1253 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ANKRD53Q8N9V6 530 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 OR5L2Q8NGL0 311 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 OR56A3Q8NH54 315 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 EEF1AKMT1Q8WVE0 214 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SREK1Q8WXA9 508 aaKnown RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 PIGTQ969N2 578 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 NEIL2Q969S2 332 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 GAL3ST3Q96A11 431 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 PYCR2Q96C36 320 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 HES6Q96HZ4 224 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 FAR2Q96K12 515 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 DACH2Q96NX9 599 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 OR4K3Q96R72 315 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 AIF1LQ9BQI0 150 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 NPLQ9BXD5 320 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SLC6A15Q9H2J7 730 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SPNS1Q9H2V7 528 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 KLHL31Q9H511 634 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ZFP64Q9NPA5 681 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ACKR4Q9NPB9 350 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 SEMA4BQ9NPR2 832 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 TRMT1Q9NXH9 659 aaKnown RBP9.34□□□□□ -0.91
TRIM28-210ENST00000597618 QPCTLQ9NXS2 382 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ARL15Q9NXU5 204 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ADAM21Q9UKJ8 722 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 ARID1AO14497 2285 aa9.34□□□□□ -0.91
TRIM28-210ENST00000597618 MPDZO75970 2070 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 A0A088AWK7 358 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 C15orf38-AP3S2A0A0A6YYH1 394 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 CTAGE15A4D2H0 777 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 C4orf51C9J302 202 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 BMP7P18075 431 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF10P21506 573 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 SAT1P21673 171 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 OPRM1P35372 400 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 PIGAP37287 484 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 SLC1A2P43004 574 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 AP1S2P56377 157 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 WNT3P56703 355 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 RAB38P57729 211 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 STXBP1P61764 594 aaKnown RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 RNF4P78317 190 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 SARNPP82979 210 aaKnown RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 RBBP5Q15291 538 aaKnown RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 SIX1Q15475 284 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 CLNKQ7Z7G1 428 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 CTAGE6Q86UF2 777 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 LMNTD2Q8IXW0 634 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 PM20D2Q8IYS1 436 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 FAM47BQ8NA70 645 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 PTPMT1Q8WUK0 201 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 ATL1Q8WXF7 558 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 ISL2Q96A47 359 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF669Q96BR6 464 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 TSNARE1Q96NA8 513 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 OR8D2Q9GZM6 311 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 PELI2Q9HAT8 420 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 TRPS1Q9UHF7 1281 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 REXO2Q9Y3B8 237 aaKnown RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 DYRK1BQ9Y463 629 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 MAD1L1Q9Y6D9 718 aa9.33□□□□□ -0.92
TRIM28-210ENST00000597618 SONP18583 2426 aaKnown RBP9.33□□□□□ -0.92
TRIM28-210ENST00000597618 A0A1W2PPR1 153 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 LRRC3CA6NJW4 275 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 C17orf105B2RV13 164 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 B3GALT2O43825 422 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 ZNF354AO60765 605 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-210ENST00000597618 IL18BPO95998 194 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 RFPL3SP0C7P2 107 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 CTSSP25774 331 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 HNRNPFP52597 415 aaKnown RBP9.32□□□□□ -0.92
TRIM28-210ENST00000597618 RUNX2Q13950 521 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 RCN2Q14257 317 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 MPEG1Q2M385 716 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 SLC22A10Q63ZE4 541 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 NSUN5P2Q63ZY6 315 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 ADGRD1Q6QNK2 874 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 GSTA5Q7RTV2 222 aa9.32□□□□□ -0.92
TRIM28-210ENST00000597618 YTHDF3Q7Z739 585 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms