RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FAM47BQ8NA70 645 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 ZFP28Q8NHY6 868 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 MMABQ96EY8 250 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 ZBED6CLQ96FA7 236 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 C10orf90Q96M02 699 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 DEPDC7Q96QD5 511 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 BBS4Q96RK4 519 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 RPF2Q9H7B2 306 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 FBXO8Q9NRD0 319 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 MAP10Q9P2G4 905 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 UTS2RQ9UKP6 389 aa14.42□□□□□ -0.1
TRIM28-209ENST00000597423 MRPS2Q9Y399 296 aaKnown RBP14.42□□□□□ -0.1
TRIM28-209ENST00000597423 A0A096LPI6 279 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 A0A1W2PRB8 838 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 B4E171 279 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 C4orf51C9J302 202 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 H3BMH7 237 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 RFXANKO14593 260 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 CASC3O15234 703 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 FOXS1O43638 330 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 B3GALT4O96024 378 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 MT-CO3P00414 261 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 CTSBP07858 339 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 FGF5P12034 268 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 CSRP1P21291 193 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 NTSP30990 170 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 MPIP34949 423 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 PGM1P36871 562 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 TSPAN7P41732 249 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 SLC25A3Q00325 362 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 INSM1Q01101 510 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 MC2RQ01718 297 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 BIKQ13323 160 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 TRMT5Q32P41 509 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 SLC2A7Q6PXP3 512 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 ASRGL1Q7L266 308 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 PDSS2Q86YH6 399 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 DEFB107AQ8IZN7 70 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 PGAM4Q8N0Y7 254 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 CA13Q8N1Q1 262 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 TRIML2Q8N7C3 387 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 OR4K14Q8NGD5 310 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 NETO1Q8TDF5 533 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 OR5P2Q8WZ92 322 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 GTF2H4Q92759 462 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 COL26A1Q96A83 441 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 LRRC58Q96CX6 371 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 GBP5Q96PP8 586 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 PANX1Q96RD7 426 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 ZPBPQ9BS86 351 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 SLC35C2Q9NQQ7 365 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 ACSS1Q9NUB1 689 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 TEX10Q9NXF1 929 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 SIDT1Q9NXL6 827 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 PRPF19Q9UMS4 504 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 EXO1Q9UQ84 846 aaKnown RBP14.41□□□□□ -0.1
TRIM28-209ENST00000597423 ENTPD4Q9Y227 616 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 MAN2B2Q9Y2E5 1009 aa14.41□□□□□ -0.1
TRIM28-209ENST00000597423 UNC13CQ8NB66 2214 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 A0A1B0GX78 115 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 NVLO15381 856 aaKnown RBP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 GSC2O15499 205 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 PDPK1O15530 556 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 RDH16O75452 317 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 SCRG1O75711 98 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 AIFM1O95831 613 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CD1EP15812 388 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CSNK2A2P19784 350 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 ITGAXP20702 1163 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CPOXP36551 454 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 MANFP55145 182 aaKnown RBP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 RAB15P59190 212 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 PSME3P61289 254 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 EIF3IQ13347 325 aaKnown RBP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 C16orf72Q14CZ0 275 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 SPATS1Q496A3 300 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 PAGE3Q5JUK9 113 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CDCP2Q5VXM1 449 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 C18orf63Q68DL7 685 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 ANKRD26P1Q6NSI1 321 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 RHBDD2Q6NTF9 364 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 SLC48A1Q6P1K1 146 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 RIPOR1Q6ZS17 1223 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 B3GNT8Q7Z7M8 397 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 DHDDSQ86SQ9 333 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 RETREG3Q86VR2 466 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 ZNF595Q8IYB9 648 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 DEFB124Q8NES8 71 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 EXOSC8Q96B26 276 aaKnown RBP14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CLIP3Q96DZ5 547 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 CCDC115Q96NT0 180 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 YIPF2Q9BWQ6 316 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 IL1RL2Q9HB29 575 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 ZNF304Q9HCX3 659 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 SLC39A1Q9NY26 324 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 VPS4AQ9UN37 437 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 L3MBTL1Q9Y468 752 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 PCDHB3Q9Y5E6 796 aa14.4□□□□□ -0.1
TRIM28-209ENST00000597423 ZNF860A6NHJ4 632 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms