RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 STX16O14662 325 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 OIP5O43482 229 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PRAMEF4O60810 478 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 DNAJB6O75190 326 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 SH3BGRLO75368 114 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CLDN9O95484 217 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 WDPCPO95876 746 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 F10P00742 488 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 TGFB1P01137 390 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 IFNA16P05015 189 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 MTHFD2P13995 350 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 EPORP19235 508 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CD22P20273 847 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 HIST1H1TP22492 207 aaPredicted RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 CPN2P22792 545 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PIK3CBP42338 1070 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 TNFSF10P50591 281 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 LIM2P55344 173 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 BTG2P78543 158 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 OC90Q02509 493 aaPredicted RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 PCDH1Q08174 1060 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 RUNX2Q13950 521 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 E2F2Q14209 437 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 ACER2Q5QJU3 275 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PRAMEF9Q5VWM5 478 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 KHDRBS2Q5VWX1 349 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 TTC19Q6DKK2 380 aaPredicted RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 ADNP2Q6IQ32 1131 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 RPUSD3Q6P087 351 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 LCA5Q86VQ0 697 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 LGI4Q8N135 537 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 BEST3Q8N1M1 668 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PLD6Q8N2A8 252 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 HORMAD2Q8N7B1 307 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 BCORP1Q8N888 145 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 EIF1ADQ8N9N8 165 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 CATSPER1Q8NEC5 780 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 OR7G3Q8NG95 312 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 ZNF473Q8WTR7 871 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 RGMAQ96B86 450 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PHF21BQ96EK2 531 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 C19orf60Q96EN9 201 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 QRFPRQ96P65 431 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 GPR78Q96P69 363 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 SPOCK3Q9BQ16 436 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 UTP23Q9BRU9 249 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 DEFB126Q9BYW3 111 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 AICDAQ9GZX7 198 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 NOL11Q9H8H0 719 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 LYRM4Q9HD34 91 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 TIMMDC1Q9NPL8 285 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PNO1Q9NRX1 252 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 ASF1BQ9NVP2 202 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 PSMC3IPQ9P2W1 217 aaPredicted RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 FETUBQ9UGM5 382 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 DAPP1Q9UN19 280 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CSAG2Q9Y5P2 127 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CENPEQ02224 2701 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 HEATR5BQ9P2D3 2071 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 AKAP9Q99996 3911 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CREBBPQ92793 2442 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 ANKRD17O75179 2603 aaKnown RBP7.59□□□□□ -1.19
VPS53-214ENST00000572607 IGKV3D-11A0A0A0MRZ8 115 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ANKUB1A6NFN9 424 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 FAM227AF5H4B4 570 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 H0YIV9 168 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 SAP18O00422 153 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 FCHO1O14526 889 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 DYRK3O43781 588 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 PRAMEF2O60811 474 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CTNSO60931 367 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 MYO1DO94832 1006 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 AGFG2O95081 481 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 RASAL1O95294 804 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 SIX3O95343 332 aaPredicted RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 CRYABP02511 175 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 EDN3P14138 238 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 COX7A2P14406 83 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TNNI3P19429 210 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ATP5A1P25705 553 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 PTX3P26022 381 aaPredicted RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 PPP2R1BP30154 601 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TLX1P31314 330 aaPredicted RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 UQCRFS1P47985 274 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CLCN2P51788 898 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ARFIP1P53367 373 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 RPS13P62277 151 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 IFT88Q13099 833 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 SERTAD2Q14140 314 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 SLC29A2Q14542 456 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TERF2Q15554 542 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CPSF6Q16630 551 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS53-214ENST00000572607 C10orf62Q5T681 223 aaPredicted RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 DEPDC1Q5TB30 811 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 FCRLBQ6BAA4 426 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 OR4C11Q6IEV9 310 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TIFABQ6ZNK6 161 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 MILR1Q7Z6M3 343 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CLNKQ7Z7G1 428 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 RPS19BP1Q86WX3 136 aaKnown RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms