RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 POU4F2Q12837 409 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 C1orf61Q13536 156 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ZNF630Q2M218 657 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 MUM1Q2TAK8 710 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CMPK2Q5EBM0 449 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ZNF542PQ5EBM4 170 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 TOR1AIP1Q5JTV8 583 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PEAR1Q5VY43 1037 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 CPZQ66K79 652 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 MRM1Q6IN84 353 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 TMEM64Q6YI46 380 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 LRRC74BQ6ZQY2 392 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 BMP8AQ7Z5Y6 402 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 IFNEQ86WN2 208 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CALHM3Q86XJ0 350 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 TICAM1Q8IUC6 712 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 MICU2Q8IYU8 434 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 FBXL6Q8N531 539 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 RNF148Q8N7C7 305 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 FRMD1Q8N878 549 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ACOT4Q8N9L9 421 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PAPD5Q8NDF8 572 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 OR7A2PQ8NGA2 310 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 OR4A15Q8NGL6 344 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PSMA8Q8TAA3 256 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 WDR48Q8TAF3 677 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 FLVCR1-AS1Q8TAF5 88 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 GTPBP3Q969Y2 492 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 AHCYL2Q96HN2 611 aaKnown RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 ZNF583Q96ND8 569 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 C17orf62Q9BQA9 187 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CCDC3Q9BQI4 270 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ASPSCR1Q9BZE9 553 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 KLHL4Q9C0H6 718 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 SPNS1Q9H2V7 528 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 TCEAL2Q9H3H9 227 aaPredicted RBP7.57□□□□□ -1.2
VPS39-213ENST00000570062 Q9H521 79 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 TPT1P8Q9HAU6 139 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 C3orf14Q9HBI5 128 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 C11orf16Q9NQ32 467 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PRDM7Q9NQW5 492 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 OLAHQ9NV23 265 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 NLGN3Q9NZ94 848 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 PILRAQ9UKJ1 303 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 ENTPD4Q9Y227 616 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 LRRC42Q9Y546 428 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 CACNA1BQ00975 2339 aa7.57□□□□□ -1.2
VPS39-213ENST00000570062 LRRK1Q38SD2 2015 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TLCD2A6NGC4 264 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 C9JVG2 144 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SAP18O00422 153 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 MSTNO14793 375 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ARPC2O15144 300 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PDPK1O15530 556 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 DUX1O43812 170 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 NOBOXO60393 691 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PDE9AO76083 593 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 MSL3P1P0C860 447 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SMIM10L1P0DMW3 83 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 RAP2AP10114 183 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CD1EP15812 388 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ENGP17813 658 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ALOX12P18054 663 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CSNK2A2P19784 350 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 MAGP20916 626 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 BCKDHBP21953 392 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 MAOBP27338 520 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PTPN6P29350 595 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CHI3L1P36222 383 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 FNTBP49356 437 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 DHPSP49366 369 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 PRIM2P49643 509 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CSNK1EP49674 416 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 DUSP3P51452 185 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 CLCN2P51788 898 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PCBP4P57723 403 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 MTPNP58546 118 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PHC1P78364 1004 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 NHLH1Q02575 133 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CSTF1Q05048 431 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 SQSTM1Q13501 440 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TP53BP2Q13625 1128 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 FAM53BQ14153 422 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SPIDRQ14159 915 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 NR1D2Q14995 579 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 CYP51A1Q16850 503 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 VMACQ2NL98 169 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 FAM214AQ32MH5 1076 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 RABL3Q5HYI8 236 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TBCELQ5QJ74 424 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TMTC4Q5T4D3 741 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 YOD1Q5VVQ6 348 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 CWF19L1Q69YN2 538 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 FCRL6Q6DN72 434 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ZCCHC8Q6NZY4 707 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 CEP68Q76N32 757 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ZNF438Q7Z4V0 828 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 UBE3DQ7Z6J8 389 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SPPL2CQ8IUH8 684 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 RNF175Q8N4F7 328 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms