RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GRM3Q14832 879 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 UGT8Q16880 541 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 STXBP5Q5T5C0 1151 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 ALKAL2Q6UX46 152 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 ZNF655Q8N720 491 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 ZNF454Q8N9F8 522 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 HTR3CQ8WXA8 447 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CPNE4Q96A23 557 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 TEFMQ96QE5 360 aaKnown RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 RBM4BQ9BQ04 359 aaKnown RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 RBM4Q9BWF3 364 aaKnown RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 EXTL2Q9UBQ6 330 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 BTNL2Q9UIR0 455 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CDH9Q9ULB4 789 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 CA14Q9ULX7 337 aa10.4□□□□□ -0.74
CLK3-226ENST00000569406 MTF2Q9Y483 593 aaPredicted RBP10.4□□□□□ -0.74
CLK3-226ENST00000569406 MYBPHLA2RUH7 354 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 CSF3P09919 207 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 HOXB8P17481 243 aaPredicted RBP10.4□□□□□ -0.75
CLK3-226ENST00000569406 MAPK1P28482 360 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 ETV6P41212 452 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 TAF6P49848 677 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 PAFAH1B3Q15102 231 aaKnown RBP10.4□□□□□ -0.75
CLK3-226ENST00000569406 RNF212Q495C1 297 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 THEM4Q5T1C6 240 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 LCN1P1Q5VSP4 162 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 KCTD11Q693B1 232 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 C17orf99Q6UX52 265 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 SLC43A2Q8N370 569 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 COLGALT1Q8NBJ5 622 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 UPRTQ96BW1 309 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 CERS2Q96G23 380 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 MS4A3Q96HJ5 214 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 DIRAS2Q96HU8 199 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 TMEM41AQ96HV5 264 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 SFXN2Q96NB2 322 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 CPEB1Q9BZB8 566 aaKnown RBP10.4□□□□□ -0.75
CLK3-226ENST00000569406 AMBNQ9NP70 447 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 ZFP64Q9NPA5 681 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 OLA1Q9NTK5 396 aaKnown RBP10.4□□□□□ -0.75
CLK3-226ENST00000569406 NSMCE4AQ9NXX6 385 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 STUB1Q9UNE7 303 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 PCDHB14Q9Y5E9 798 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 PCDHA11Q9Y5I1 949 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 DMRT1Q9Y5R6 373 aa10.4□□□□□ -0.75
CLK3-226ENST00000569406 A0A0A0MRY4 1105 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.39□□□□□ -0.75
CLK3-226ENST00000569406 TTC24A2A3L6 582 aaPredicted RBP10.39□□□□□ -0.75
CLK3-226ENST00000569406 CRCPO75575 148 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 DNASE1P24855 282 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 TLE2Q04725 743 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ITKQ08881 620 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 DOC2AQ14183 400 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 FBXO48Q5FWF7 155 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 TEX30Q5JUR7 227 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ZNF470Q6ECI4 717 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 NAPEPLDQ6IQ20 393 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ZNF567Q8N184 647 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 PRR18Q8N4B5 295 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ZNF511Q8NB15 262 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLK3-226ENST00000569406 NXPE2Q96DL1 559 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SPATA13Q96N96 652 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 CAMK1GQ96NX5 476 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 OMDQ99983 421 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 XPR1Q9UBH6 696 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 C3orf18Q9UK00 162 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 URADA6NGE7 173 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 MPTX1A8MV57 137 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 PLA2G10O15496 165 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 GPX5O75715 221 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SUOXP51687 545 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 NUDT6P53370 316 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 HNRNPKP61978 463 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLK3-226ENST00000569406 CDC42EP1Q00587 391 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 MVKQ03426 396 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 AVPI1Q5T686 147 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 MEDAGQ5VYS4 303 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 MZT2BQ6NZ67 158 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 TIFABQ6ZNK6 161 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 LRRC8DQ7L1W4 858 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 CUZD1Q86UP6 607 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SLC34A3Q8N130 599 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SVOPLQ8N434 492 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 PCED1BQ96HM7 432 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ASAH2Q9NR71 780 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 TREM2Q9NZC2 230 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 RCOR3Q9P2K3 495 aaPredicted RBP10.39□□□□□ -0.75
CLK3-226ENST00000569406 NCKAP1Q9Y2A7 1128 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 V9GYH0 126 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 A0A096LPK6 155 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ARHGEF33A8MVX0 844 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 AIPO00170 330 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 LILRB5O75023 590 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ATP6AP2O75787 350 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 POLBP06746 335 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SLC10A3P09131 477 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 RHCEP18577 417 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 PAMP19021 973 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 ATP5A1P25705 553 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms