RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF501Q96CX3 271 aaPredicted RBP28.92■■■□□ 2.22
CTCF-203ENST00000566078 ZNF764Q96H86 408 aaPredicted RBP28.92■■■□□ 2.22
CTCF-203ENST00000566078 CDRT15Q96T59 188 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 MMADHCQ9H3L0 296 aaPredicted RBP28.92■■■□□ 2.22
CTCF-203ENST00000566078 LYRM4Q9HD34 91 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 SPAG4Q9NPE6 437 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 FGF21Q9NSA1 209 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 A0A096LPI6 279 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 A0A0A6YYC8 382 aaPredicted RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 PRSS51A0A1B0GVH4 220 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 C1orf226A1L170 272 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 I3L1I5 382 aaPredicted RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 AGRPO00253 132 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 NR2F6P10588 404 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 TGM1P22735 817 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 CPN2P22792 545 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 SKP1P63208 163 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 GPR135Q8IZ08 494 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 OR5T3Q8NGG3 340 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 PAIP1Q9H074 479 aaKnown RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 ENAMQ9NRM1 1142 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 ADA2Q9NZK5 511 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 EHD3Q9NZN3 535 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 KCMF1Q9P0J7 381 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 BTNL2Q9UIR0 455 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 SPEGQ15772 3267 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 GLOD5A6NK44 160 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 RNASET2O00584 256 aaKnown RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 RFXANKO14593 260 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 CPSF4O95639 269 aaKnown RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 BUD31P41223 144 aaPredicted RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 CDKN2CP42773 168 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 EMP3P54852 163 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 FAM53BQ14153 422 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 FAM180BQ6P0A1 224 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 SCUBE1Q8IWY4 988 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 CA13Q8N1Q1 262 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 DNAJB8Q8NHS0 232 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 DNAJB14Q8TBM8 379 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 CCDC115Q96NT0 180 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 PANX1Q96RD7 426 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 CGREF1Q99674 301 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 NPLQ9BXD5 320 aaPredicted RBP28.91■■■□□ 2.22
CTCF-203ENST00000566078 SERTAD3Q9UJW9 196 aa28.91■■■□□ 2.22
CTCF-203ENST00000566078 FER1L5A0AVI2 2057 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 PDPK1O15530 556 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 FOXS1O43638 330 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 GDF9O60383 454 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 ERN1O75460 977 aaKnown RBP28.9■■■□□ 2.22
CTCF-203ENST00000566078 PDE5AO76074 875 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 SLC7A2P52569 658 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 ACY1Q03154 408 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 NIPAL1Q6NVV3 410 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 KIAA2013Q8IYS2 634 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 CSF3RQ99062 836 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 CUTCQ9NTM9 273 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 VAPAQ9P0L0 249 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 UTS2RQ9UKP6 389 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 PACSIN3Q9UKS6 424 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 NEUROG3Q9Y4Z2 214 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 SPACA6W5XKT8 324 aa28.9■■■□□ 2.22
CTCF-203ENST00000566078 PGRMC2O15173 223 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 NSA2O95478 260 aaKnown RBP28.89■■■□□ 2.22
CTCF-203ENST00000566078 ANP32DO95626 131 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 SLC6A2P23975 617 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 LRRC74AQ0VAA2 488 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 GTDC1Q4AE62 458 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 LRIF1Q5T3J3 769 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 B3GNT8Q7Z7M8 397 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 CDC6Q99741 560 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 TRIM8Q9BZR9 551 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 SLC6A13Q9NSD5 602 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 MS4A12Q9NXJ0 267 aa28.89■■■□□ 2.22
CTCF-203ENST00000566078 NIPSNAP3AQ9UFN0 247 aaPredicted RBP28.89■■■□□ 2.22
CTCF-203ENST00000566078 GSNP06396 782 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 TRPC1P48995 793 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 FAM214AQ32MH5 1076 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 CCDC157Q569K6 752 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 TLDC1Q6P9B6 456 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 MSRB3Q8IXL7 192 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 SLC25A37Q9NYZ2 338 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 TMEM181Q9P2C4 612 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 NUP210LQ5VU65 1888 aa28.88■■■□□ 2.21
CTCF-203ENST00000566078 AVPR1BP47901 424 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 SHC2P98077 582 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TRA2AQ13595 282 aaKnown RBP eCLIP28.87■■■□□ 2.21
CTCF-203ENST00000566078 NANOGP8Q6NSW7 305 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 SLC48A1Q6P1K1 146 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 METTL27Q8N6F8 245 aaPredicted RBP28.87■■■□□ 2.21
CTCF-203ENST00000566078 NATD1Q8N6N6 113 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 OR4A15Q8NGL6 344 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 OR6C1Q96RD1 312 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 NANOGQ9H9S0 305 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TAS2R7Q9NYW3 318 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 CLCA2Q9UQC9 943 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 PCDHB14Q9Y5E9 798 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 KIF26BQ2KJY2 2108 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 TRBV5-3A0A0A0MS03 114 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 C15orf38-AP3S2A0A0A6YYH1 394 aa28.87■■■□□ 2.21
CTCF-203ENST00000566078 A0A1W2PRB8 838 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms