RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF585AQ6P3V2 769 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 CAPN12Q6ZSI9 719 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 ACAD11Q709F0 780 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 UBE3DQ7Z6J8 389 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 SLC22A16Q86VW1 577 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 TMEM251Q8N6I4 163 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 SNX31Q8N9S9 440 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 SCYL1Q96KG9 808 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 SMC6Q96SB8 1091 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 CAPS2Q9BXY5 557 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 DERL2Q9GZP9 239 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 RHOJQ9H4E5 214 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 COPS7BQ9H9Q2 264 aaPredicted RBP15.63■□□□□ 0.09
CLN3-211ENST00000564091 CAB39LQ9H9S4 337 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 SMYD2Q9NRG4 433 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 DNAJC11Q9NVH1 559 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 TRMT1Q9NXH9 659 aaKnown RBP15.63■□□□□ 0.09
CLN3-211ENST00000564091 GPRC5BQ9NZH0 403 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 VTI1BQ9UEU0 232 aa15.63■□□□□ 0.09
CLN3-211ENST00000564091 MTO1Q9Y2Z2 717 aaKnown RBP15.63■□□□□ 0.09
CLN3-211ENST00000564091 C17orf105B2RV13 164 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 CLGNO14967 610 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 LDB3O75112 727 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 SEC31AO94979 1220 aaKnown RBP15.62■□□□□ 0.09
CLN3-211ENST00000564091 CELA3AP09093 270 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 CD22P20273 847 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 CNR1P21554 472 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 SLC12A2P55011 1212 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 RNF4P78317 190 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 EFTUD2Q15029 972 aaKnown RBP eCLIP15.62■□□□□ 0.096e-10■■■■□ 26.2
CLN3-211ENST00000564091 ZNF793Q6ZN11 406 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 RGS9BPQ6ZS82 235 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 SYDE1Q6ZW31 735 aaPredicted RBP15.62■□□□□ 0.09
CLN3-211ENST00000564091 GPSM1Q86YR5 675 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 MORN4Q8NDC4 146 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 OR10Q1Q8NGQ4 319 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 OR14A16Q8NHC5 309 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 SLC2A12Q8TD20 617 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 MAPKAP1Q9BPZ7 522 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 ZNF559Q9BR84 538 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 MCMBPQ9BTE3 642 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 PITHD1Q9GZP4 211 aaPredicted RBP15.62■□□□□ 0.09
CLN3-211ENST00000564091 EHD1Q9H4M9 534 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 POPDC3Q9HBV1 291 aa15.62■□□□□ 0.09
CLN3-211ENST00000564091 ATP6AP2A0A1C7CYW4 349 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 FOXO6A8MYZ6 492 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 RTCAO00442 366 aaKnown RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 PHGDHO43175 533 aaKnown RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 SH3BGRLO75368 114 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 STK16O75716 305 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 ATP6AP2O75787 350 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 WISP3O95389 354 aaPredicted RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 HOXD4P09016 255 aaPredicted RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 TCP1P17987 556 aaKnown RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 ACVR2AP27037 513 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 HPDP32754 393 aaPredicted RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 GGT5P36269 586 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 MAGEA5P43359 124 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 DNASE1L1P49184 302 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 RCN2Q14257 317 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 OR4D1Q15615 310 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 NDUFAF5Q5TEU4 345 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 RTL4Q6ZR62 310 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 GK5Q6ZS86 529 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 TRILQ7L0X0 811 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 TCAIMQ8N3R3 496 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 NRGNQ92686 78 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 PTCD3Q96EY7 689 aaKnown RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 FAM173AQ9BQD7 235 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 IL1RL2Q9HB29 575 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 PRM3Q9NNZ6 103 aa15.61■□□□□ 0.09
CLN3-211ENST00000564091 SEMA4BQ9NPR2 832 aaPredicted RBP15.61■□□□□ 0.09
CLN3-211ENST00000564091 CXorf49A8MYA2 514 aaPredicted RBP15.6■□□□□ 0.09
CLN3-211ENST00000564091 E7ESA3 106 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 ZSCAN12O43309 604 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 ETHE1O95571 254 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 IGHG3P01860 377 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 CCDC166P0CW27 439 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 GLI4P10075 376 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 CCL3P10147 92 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 CD1DP15813 335 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 EPORP19235 508 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 KCNC1P48547 511 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 POU4F1Q01851 419 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 TGM3Q08188 693 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 FOXO1Q12778 655 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 MYBPHQ13203 477 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 PDK4Q16654 411 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 RTL6Q6ICC9 239 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 SULT1C3Q6IMI6 304 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 FAM47EQ6ZV65 393 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 TMEM200AQ86VY9 491 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 CREG2Q8IUH2 290 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 OR4N5Q8IXE1 308 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 ZBED8Q8IZ13 594 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 FAM109AQ8N4B1 249 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 ACOT4Q8N9L9 421 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 OR5L2Q8NGL0 311 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 KIAA1191Q96A73 305 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 ANKRD9Q96BM1 317 aaPredicted RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms