RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ZNF395Q9H8N7 513 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-204ENST00000563739 ADAP2Q9NPF8 381 aa9.54□□□□□ -0.88
SF3B3-204ENST00000563739 PNO1Q9NRX1 252 aaKnown RBP9.54□□□□□ -0.88
SF3B3-204ENST00000563739 BFARQ9NZS9 450 aa9.54□□□□□ -0.88
SF3B3-204ENST00000563739 TRPS1Q9UHF7 1281 aa9.54□□□□□ -0.88
SF3B3-204ENST00000563739 AMFRQ9UKV5 643 aa9.54□□□□□ -0.88
SF3B3-204ENST00000563739 ERVK-11Q9UQG0 969 aa9.54□□□□□ -0.88
SF3B3-204ENST00000563739 DSCAMO60469 2012 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 ROS1P08922 2347 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 MIF4GDA9UHW6 222 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 EIF3FO00303 357 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PRAMEF4O60810 478 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 HAUS5O94927 633 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 LRATO95237 230 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 LOXP28300 417 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 AHRP35869 848 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 MAGEA6P43360 314 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 CCR8P51685 355 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 AGFG1P52594 562 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 CDKN2DP55273 166 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 SORDQ00796 357 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PPP1R3AQ16821 1122 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 TOR1AIP1Q5JTV8 583 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 WLSQ5T9L3 541 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 FNDC7Q5VTL7 733 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PRAMEF9Q5VWM5 478 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 DGAT2L6Q6ZPD8 337 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 ZNF662Q6ZS27 426 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PEX26Q7Z412 305 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 CLNKQ7Z7G1 428 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 SDCCAG8Q86SQ7 713 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 C9orf40Q8IXQ3 194 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 RNF10Q8N5U6 811 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 FAM47BQ8NA70 645 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 NEIL3Q8TAT5 605 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PAQR8Q8TEZ7 354 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 ALKBH8Q96BT7 664 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 SARAFQ96BY9 339 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 SNF8Q96H20 258 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 Q96MF0 132 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 TSNARE1Q96NA8 513 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 NDNQ99608 321 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 CLK4Q9HAZ1 481 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PLAC1Q9HBJ0 212 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 NEUROD4Q9HD90 331 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 ACAD8Q9UKU7 415 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 CNOT11Q9UKZ1 510 aaKnown RBP9.53□□□□□ -0.88
SF3B3-204ENST00000563739 ZNF148Q9UQR1 794 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PPP2R2CQ9Y2T4 447 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 PCDHGB3Q9Y5G1 929 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 NPFFR2Q9Y5X5 522 aa9.53□□□□□ -0.88
SF3B3-204ENST00000563739 HSPB2A8KAH6 182 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 HRKO00198 91 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ETHE1O95571 254 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 EPPINO95925 133 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SERPIND1P05546 499 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 GABRA1P14867 456 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 TIMP3P35625 211 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PEX19P40855 299 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 CETN2P41208 172 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 MAGEA3P43357 314 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 HSD17B7P56937 341 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 RAB38P57729 211 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 RNF4P78317 190 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 BASP1P80723 227 aaKnown RBP9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SP140Q13342 867 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SLC10A1Q14973 349 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ELAVL1Q15717 326 aaKnown RBP9.52□□□□□ -0.89
SF3B3-204ENST00000563739 HSPB2Q16082 182 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ADPRMQ3LIE5 342 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PRAMEF20Q5VT98 475 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PAQR3Q6TCH7 311 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 FAM47EQ6ZV65 393 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ABHD13Q7L211 337 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SYCE1Q8N0S2 351 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 FBXW8Q8N3Y1 598 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 C9orf106Q8NAJ2 232 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ZNF721Q8TF20 911 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SLC5A11Q8WWX8 675 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ZNF592Q92610 1267 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 ZNF669Q96BR6 464 aaPredicted RBP9.52□□□□□ -0.89
SF3B3-204ENST00000563739 FBXL8Q96CD0 374 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 MS4A6EQ96DS6 147 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 MARK4Q96L34 752 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PRDM14Q9GZV8 571 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PARVBQ9HBI1 364 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 LZTFL1Q9NQ48 299 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 PRTFDC1Q9NRG1 225 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SACM1LQ9NTJ5 587 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 SLC17A6Q9P2U8 582 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 GUCA1BQ9UMX6 200 aa9.52□□□□□ -0.89
SF3B3-204ENST00000563739 CHCHD2Q9Y6H1 151 aaPredicted RBP9.52□□□□□ -0.89
SF3B3-204ENST00000563739 USF3Q68DE3 2245 aa9.51□□□□□ -0.89
SF3B3-204ENST00000563739 SVEP1Q4LDE5 3571 aa9.51□□□□□ -0.89
SF3B3-204ENST00000563739 MBD3L4A6NDZ8 208 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-204ENST00000563739 MBD3L3A6NE82 208 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-204ENST00000563739 TUBAL3A6NHL2 446 aa9.51□□□□□ -0.89
SF3B3-204ENST00000563739 MBD3L5A6NJ08 208 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-204ENST00000563739 DEFB108AA8MXU0 73 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms