RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 STX4Q12846 297 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 DEPDC1Q5TB30 811 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 KHDRBS2Q5VWX1 349 aaKnown RBP11.68□□□□□ -0.54
SMAD3-208ENST00000558827 C18orf63Q68DL7 685 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 SLC25A25Q6KCM7 469 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CEP128Q6ZU80 1094 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CHSY3Q70JA7 882 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF595Q8IYB9 648 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 LAS2Q8IYD9 372 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 B3GNT7Q8NFL0 401 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 RHEBL1Q8TAI7 183 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 UBE2E3Q969T4 207 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 PPWD1Q96BP3 646 aaKnown RBP11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CMTM7Q96FZ5 175 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 KCNC2Q96PR1 638 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 OR8D2Q9GZM6 311 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 DMRT3Q9NQL9 472 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 XPR1Q9UBH6 696 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 SEC14L3Q9UDX4 400 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 NPIPA1Q9UND3 350 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 MRPS33Q9Y291 106 aaKnown RBP11.68□□□□□ -0.54
SMAD3-208ENST00000558827 NOTCH2Q04721 2471 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 NBPF19A0A087WUL8 3843 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 EXOC1LA0A1B0GW35 172 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 GLOD5A6NK44 160 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 FOXO6A8MYZ6 492 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 GOLGA8RI6L899 631 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 WWP2O00308 870 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 PPP6CO00743 305 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 OR7A17O14581 309 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 ZG16O60844 167 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CTNSO60931 367 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 EEDO75530 441 aaKnown RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 ETHE1O95571 254 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 MYBL2P10244 700 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 HIST1H1TP22492 207 aaPredicted RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 GSTM2P28161 218 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 SERPINB9P50453 376 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CLCN2P51788 898 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CDH13P55290 713 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 HSD17B7P56937 341 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 HSF1Q00613 529 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 NAA30Q147X3 362 aaPredicted RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 ZRSR2Q15696 482 aaKnown RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 GLE1Q53GS7 698 aaKnown RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 OR4C11Q6IEV9 310 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 DGAT2L6Q6ZPD8 337 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF227Q86WZ6 799 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 RELL1Q8IUW5 271 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CPSF7Q8N684 471 aaKnown RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CEP112Q8N8E3 955 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 APCDD1LQ8NCL9 501 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 OR52B6Q8NGF0 335 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 RGMAQ96B86 450 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 ANKRD9Q96BM1 317 aaPredicted RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 TRIM44Q96DX7 344 aaPredicted RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 TBCDQ9BTW9 1192 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 FUT8Q9BYC5 575 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 SEMA4BQ9NPR2 832 aaPredicted RBP11.67□□□□□ -0.54
SMAD3-208ENST00000558827 CLCA3PQ9Y6N3 262 aa11.67□□□□□ -0.54
SMAD3-208ENST00000558827 GTF3C1Q12789 2109 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 A0A1B0GTL3 188 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 C17orf105B2RV13 164 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 G3V3Y1 287 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 KIF2AO00139 706 aaPredicted RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 PLPP1O14494 284 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 FGF17O60258 216 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 KLK8O60259 260 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 SMIM24O75264 130 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 SLC25A12O75746 678 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 KRT38O76015 456 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 DDAH2O95865 285 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 CRYABP02511 175 aaKnown RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 RBP1P09455 135 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 GCAP28676 217 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 HPDP32754 393 aaPredicted RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 MAGEA12P43365 314 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 CYB561P49447 251 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 CCNG1P51959 295 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 HNRNPH2P55795 449 aaKnown RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 GPR85P60893 370 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 ALDH6A1Q02252 535 aaKnown RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 PCBP2Q15366 365 aaKnown RBP eCLIP11.66□□□□□ -0.542e-6■■■■■ 27.4
SMAD3-208ENST00000558827 TMEM35AQ53FP2 167 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 RNFT1Q5M7Z0 435 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 LIPJQ5W064 366 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF787Q6DD87 383 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 TAOK1Q7L7X3 1001 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 IFT20Q8IY31 132 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 TMEM156Q8N614 296 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 SRFBP1Q8NEF9 429 aaKnown RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 PTPMT1Q8WUK0 201 aaPredicted RBP11.66□□□□□ -0.54
SMAD3-208ENST00000558827 VMP1Q96GC9 406 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 SCMH1Q96GD3 660 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 SEC16BQ96JE7 1060 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 CCDC77Q9BR77 488 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 TSPYL1Q9H0U9 437 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 LYRM4Q9HD34 91 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 ADAP2Q9NPF8 381 aa11.66□□□□□ -0.54
SMAD3-208ENST00000558827 ATG4BQ9Y4P1 393 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms