RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PIGKQ92643 395 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 PPCDCQ96CD2 204 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CCDC32Q9BV29 185 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SEMA3GQ9NS98 782 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 PSME4Q14997 1843 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 A0A0G2JMP0 313 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SCO2O43819 266 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CYP2A6P11509 494 aaPredicted RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 GJA1P17302 382 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 GPX2P18283 190 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 NAT1P18440 290 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 WNT3P56703 355 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 TAS2R50P59544 299 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 RPS25P62851 125 aaKnown RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 FAPQ12884 760 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 TCEA2Q15560 299 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 KIAA1161Q6NSJ0 714 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CNIH2Q6PI25 160 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 BRAT1Q6PJG6 821 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 LAPTM4BQ86VI4 370 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 THOC6Q86W42 341 aaKnown RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 OR52P1PQ8NH57 321 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 XAGE5Q8WWM1 108 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 TADA1Q96BN2 335 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CRELD1Q96HD1 420 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SAMD11Q96NU1 681 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 PARK7Q99497 189 aaKnown RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 ZSCAN5AQ9BUG6 496 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 UNCXA6NJT0 531 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 STC2O76061 302 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CR2P20023 1033 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 DDOSTP39656 456 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 MAGEA11P43364 429 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 MAP2K3P46734 347 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 RPL6Q02878 288 aaKnown RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 SPRYD7Q5W111 196 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SAXO2Q658L1 398 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SIGIRRQ6IA17 410 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SLC30A8Q8IWU4 369 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 ARL14EPQ8N8R7 260 aaPredicted RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 EPYCQ99645 322 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 SPATA2Q9UM82 520 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 ASGR1P07306 291 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 POLR2EP19388 210 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 CELP19835 753 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CD22P20273 847 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 PSPHP78330 225 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 POU6F2P78424 691 aaPredicted RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 CLLU1OSQ5K130 101 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FAM205BPQ63HN1 556 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TMEM173Q86WV6 379 aaPredicted RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 HUS1BQ8NHY5 278 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TMEM80Q96HE8 168 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 LRR1Q96L50 414 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 SLC22A12Q96S37 553 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TSPAN18Q96SJ8 248 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 PTPN18Q99952 460 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 SRRQ9GZT4 340 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 GABARAPL1Q9H0R8 117 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TRPM5Q9NZQ8 1165 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FNIP2Q9P278 1114 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 GRIP1Q9Y3R0 1128 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 V9GYH0 126 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 A0A0B4J293 547 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 PRAMEF25A6NGN4 478 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CKMP06732 381 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 HBQ1P09105 142 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 PEPDP12955 493 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 POU3F3P20264 500 aaPredicted RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 EVI2BP34910 448 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 ZNF91Q05481 1191 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FCHO2Q0JRZ9 810 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 GPR19Q15760 415 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 DCST1Q5T197 706 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 IDNKQ5T6J7 187 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 BCL2L15Q5TBC7 163 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CEACAM20Q6UY09 585 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 LINC00299Q6ZSB3 139 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FAM9CQ8IZT9 166 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 DENND6BQ8NEG7 585 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FAM46DQ8NEK8 389 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 RNF31Q96EP0 1072 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 PITX2Q99697 317 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 TTLL2Q9BWV7 592 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 SMG9Q9H0W8 520 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 NARFLQ9H6Q4 476 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 ANKRA2Q9H9E1 313 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 RUVBL1Q9Y265 456 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 MAN2B2Q9Y2E5 1009 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 DOCK4Q8N1I0 1966 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 LOC105369274A0A096LPK9 316 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 A0A1W2PPK0 400 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 SCAMP2O15127 329 aaKnown RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 ZNF780AO75290 641 aaPredicted RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 PRKAR1AP10644 381 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 NSG1P42857 185 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 CTSOP43234 321 aaPredicted RBP10.83□□□□□ -0.68
LDLR-208ENST00000558518 HYAL2Q12891 473 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 FGFBP1Q14512 234 aa10.83□□□□□ -0.68
LDLR-208ENST00000558518 ADGRF1Q5T601 910 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms