RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 OR9A1PQ8NGU1 263 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 MAGEB10Q96LZ2 347 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 PKP4Q99569 1192 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 RAB11FIP5Q9BXF6 653 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 DCLRE1BQ9H816 532 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 ZBTB26Q9HCK0 441 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 TNFRSF12AQ9NP84 129 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 INTS7Q9NVH2 962 aaKnown RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 DHCR7Q9UBM7 475 aaKnown RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 AP1M2Q9Y6Q5 423 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 ARHGEF33A8MVX0 844 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 EIF3FO00303 357 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 AZIN1O14977 448 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 PSIP1O75475 530 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 SKAP2O75563 359 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 SIX3O95343 332 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 MLYCDO95822 493 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 CATP04040 527 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 DNAJA1P31689 397 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 SQLEQ14534 574 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 MAPRE2Q15555 327 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 C3AR1Q16581 482 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 TRMT5Q32P41 509 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 UGT3A2Q3SY77 523 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 LINC00696Q6ZRV3 163 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 RPS27LQ71UM5 84 aaKnown RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 ULK2Q8IYT8 1036 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 ZUFSPQ96AP4 578 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 PPP1R36Q96LQ0 422 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 NDC1Q9BTX1 674 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 THTPAQ9BU02 230 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 CHRNA10Q9GZZ6 450 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 MID1IP1Q9NPA3 183 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 NDE1Q9NXR1 346 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 TNFRSF10DQ9UBN6 386 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 NDOR1Q9UHB4 597 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 GPN3Q9UHW5 284 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-230ENST00000557427 PCTPQ9UKL6 214 aa11.81□□□□□ -0.52
SHMT2-230ENST00000557427 A0A088AWK7 358 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 A0A0J9YVX5 310 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 A0A1W2PPV9 198 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 KIAA1324LA8MWY0 1029 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SOCS6O14544 535 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 ZSCAN9O15535 394 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 CCNT2O60583 730 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 EIF2S1P05198 315 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 ITGAXP20702 1163 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 CDH13P55290 713 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 VSX2P58304 361 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 DCDP81605 110 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SLC25A3Q00325 362 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 LTBQ06643 244 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 FOXD4Q12950 439 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 CUL3Q13618 768 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 CYLC2Q14093 348 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 KPNB1Q14974 876 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PCBP2Q15366 365 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 TGFBIQ15582 683 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 ZC3H12BQ5HYM0 836 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 TLDC1Q6P9B6 456 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PGM2L1Q6PCE3 622 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 C16orf89Q6UX73 402 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 MEX3BQ6ZN04 569 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 TTLL10Q6ZVT0 673 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 LARP4Q71RC2 724 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SNX32Q86XE0 403 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PRIMA1Q86XR5 153 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 MYO1HQ8N1T3 1032 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PDPRQ8NCN5 879 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PPFIBP2Q8ND30 876 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 OR2L3Q8NG85 312 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 OR2A1Q8NGT9 310 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 ASB11Q8WXH4 323 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SMPDL3AQ92484 453 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 EPS8L2Q9H6S3 715 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SLC22A11Q9NSA0 550 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 NOP53Q9NZM5 478 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 CD274Q9NZQ7 290 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 STOX2Q9P2F5 926 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SEC14L3Q9UDX4 400 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SLC7A8Q9UHI5 535 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 TINAGQ9UJW2 476 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 PRPF19Q9UMS4 504 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 FIS1Q9Y3D6 152 aa11.8□□□□□ -0.52
SHMT2-230ENST00000557427 TNPO3Q9Y5L0 923 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.8□□□□□ -0.52
SHMT2-230ENST00000557427 ABCA4P78363 2273 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 LOC105369274A0A096LPK9 316 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 LOC102723532A0A0G2JNH3 316 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 LOC100653049A0A140TA62 436 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 LRRC14BA6NHZ5 514 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 UBDO15205 165 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 NRP2O60462 931 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 CTSVO60911 334 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 ENTPD5O75356 428 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 KRT34O76011 436 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 ESRRBO95718 433 aa11.79□□□□□ -0.52
SHMT2-230ENST00000557427 S100BP04271 92 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-230ENST00000557427 MPC1LP0DKB6 136 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms