RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 HID1Q8IV36 788 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 CNTN4Q8IWV2 1026 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 EID3Q8N140 333 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 CBARPQ8N350 705 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 DTWD1Q8N5C7 304 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ZFAND1Q8TCF1 268 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 TWIST2Q8WVJ9 160 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ASB12Q8WXK4 309 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 ELMO1Q92556 727 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MARVELD3Q96A59 401 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 TUBGCP3Q96CW5 907 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MCCC1Q96RQ3 725 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 CDADC1Q9BWV3 514 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 RANGRFQ9HD47 186 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-216ENST00000552909 GPR27Q9NS67 375 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 TREX1Q9NSU2 369 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 C14orf119Q9NWQ9 140 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MAT2BQ9NZL9 334 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 TEKT2Q9UIF3 430 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 OR1A2Q9Y585 309 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 PTGDR2Q9Y5Y4 395 aa7.34□□□□□ -1.23
LIMA1-216ENST00000552909 MED19A0JLT2 244 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ASPDHA6ND91 283 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CCL22O00626 93 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FPGTO14772 594 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 DSCR3O14972 297 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LDB2O43679 373 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FAM20BO75063 409 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TRBC1P01850 177 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LCKP06239 509 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LTA4HP09960 611 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PAMP19021 973 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ERP29P30040 261 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 UQCRC1P31930 480 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 NOVA1P51513 510 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PTSQ03393 145 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLC14A1Q13336 389 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FZD2Q14332 565 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 FAM214AQ32MH5 1076 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ZC3H12BQ5HYM0 836 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF678Q5SXM1 525 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ARMC4Q5T2S8 1044 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ANKRD34AQ69YU3 496 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 XKRXQ6PP77 449 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CRTC1Q6UUV9 634 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 Q6ZVL8 140 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF767PQ75MW2 155 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 HSD11B1LQ7Z5J1 315 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 KCTD20Q7Z5Y7 419 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR8H2Q8N162 312 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TCAIMQ8N3R3 496 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR6P1Q8NGX9 317 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR5K1Q8NHB7 308 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LRRC20Q8TCA0 184 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SAP25Q8TEE9 199 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SETD7Q8WTS6 366 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLC7A6Q92536 515 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 L3HYPDHQ96EM0 354 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ROGDIQ9GZN7 287 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 INTS7Q9NVH2 962 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 UCKL1Q9NWZ5 548 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TBC1D24Q9ULP9 559 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 VPS4AQ9UN37 437 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PPIL1Q9Y3C6 166 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PCDHB14Q9Y5E9 798 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PCDHGB2Q9Y5G2 931 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LYVE1Q9Y5Y7 322 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 HSPE1-MOB4S4R3N1 261 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CFAP47Q6ZTR5 3102 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ASXL3Q9C0F0 2248 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ACACBO00763 2458 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SPTY2D1-AS1A0A0U1RR47 76 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SPAARA0A1B0GVQ0 90 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 C2orf81A6NN90 581 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 AZIN1O14977 448 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 VPS4BO75351 444 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 UGT2B17O75795 530 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 OR7A10O76100 309 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CLDN7O95471 211 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 NPPAP01160 153 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PCCBP05166 539 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF883P0CG24 379 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 IFI30P13284 250 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 GGT1P19440 569 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 VIPR1P32241 457 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 UGT2B15P54855 530 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 POU6F2P78424 691 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLAMF1Q13291 335 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LAPTM5Q13571 262 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 CDKN3Q16667 212 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SYT16Q17RD7 645 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 TOR2AQ5JU69 321 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 LRRC66Q68CR7 880 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 EFL1Q7Z2Z2 1120 aaKnown RBP7.33□□□□□ -1.24
LIMA1-216ENST00000552909 GLT6D1Q7Z4J2 308 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 PLCZ1Q86YW0 608 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 NAXDQ8IW45 347 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 SLC25A45Q8N413 288 aa7.33□□□□□ -1.24
LIMA1-216ENST00000552909 DENND6BQ8NEG7 585 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms