RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FTSJ1Q9UET6 329 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 HCN4Q9Y3Q4 1203 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SNX11Q9Y5W9 270 aa7.16□□□□□ -1.26
LIMA1-213ENST00000552720 GPC6Q9Y625 555 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-213ENST00000552720 SCN3AQ9NY46 2000 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 MDC1Q14676 2089 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 WWP2O00308 870 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 SNPHO15079 494 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 KMOO15229 486 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 ENTPD6O75354 484 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 GPX5O75715 221 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 CYP7B1O75881 506 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 CCNB2O95067 398 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 C1GALT1C1LP0DN25 315 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PTGER1P34995 402 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 MMP12P39900 470 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 SOX3P41225 446 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 UGT2B15P54855 530 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PCBP3P57721 371 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 NTHL1P78549 312 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 LRRC74AQ0VAA2 488 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 CDC20Q12834 499 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PDE7AQ13946 482 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 E2F2Q14209 437 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 NFE2L1Q14494 772 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 LRIT3Q3SXY7 679 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 CRB2Q5IJ48 1285 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 DEPDC1Q5TB30 811 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 FRMPD2BQ6IN97 320 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PAQR6Q6TCH4 344 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 CCBE1Q6UXH8 406 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PTCHD4Q6ZW05 846 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 GDPD3Q7L5L3 318 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 TRMT11Q7Z4G4 463 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 LACC1Q8IV20 430 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 GEMIN6Q8WXD5 167 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 TRMT61AQ96FX7 289 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 METTL2AQ96IZ6 378 aaKnown RBP7.15□□□□□ -1.26
LIMA1-213ENST00000552720 FOPNLQ96NB1 174 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 RAD9AQ99638 391 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM38AQ9H6F2 299 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 SP140LQ9H930 580 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 ASAH2Q9NR71 780 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 SPHK2Q9NRA0 654 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 DNAJC27Q9NZQ0 273 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 IL36AQ9UHA7 158 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 WDR37Q9Y2I8 494 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 DYRK1BQ9Y463 629 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 PCDHGB6Q9Y5F9 930 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 ENPP4Q9Y6X5 453 aa7.15□□□□□ -1.26
LIMA1-213ENST00000552720 TRPM6Q9BX84 2022 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ANTXRLA6NF34 631 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZAR1LA6NP61 321 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TAF4O00268 1085 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 RFXAPO00287 272 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 KPNA3O00505 521 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF197O14709 1029 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 SPINT1O43278 529 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 LILRB5O75023 590 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 COQ9O75208 318 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 MOSPD3O75425 235 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 OXSR1O95747 527 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TBX6O95947 436 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 BCHEP06276 602 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CHRM5P08912 532 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ARAFP10398 606 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 PCSK2P16519 638 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 POLR2EP19388 210 aaKnown RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 S100A5P33763 92 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 IRS1P35568 1242 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ALDH9A1P49189 494 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CRISP1P54107 249 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 DSTNP60981 165 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 LSM11P83369 360 aaKnown RBP eCLIP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF181Q2M3W8 571 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF658BQ4V348 819 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZMAT1Q5H9K5 638 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF770Q6IQ21 691 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 PNCKQ6P2M8 343 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TRIM40Q6P9F5 258 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CEACAM20Q6UY09 585 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CCDC80Q76M96 950 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 DPPA4Q7L190 304 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 NLRP8Q86W28 1048 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF547Q8IVP9 402 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 KLHDC8AQ8IYD2 350 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 LAS2Q8IYD9 372 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 LRRC56Q8IYG6 542 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ADGRF3Q8IZF5 1079 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TAGAPQ8N103 731 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 DEPDC4Q8N2C3 294 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 OXR1Q8N573 874 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 HORMAD2Q8N7B1 307 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 KREMEN2Q8NCW0 462 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 KBTBD8Q8NFY9 601 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 GPR32P1Q8NGA4 272 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 OR4D11Q8NGI4 311 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 SLC5A11Q8WWX8 675 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TIFAQ96CG3 184 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 OTUB1Q96FW1 271 aaPredicted RBP7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms