RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NKIRAS2Q9NYR9 191 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 SNPHO15079 494 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 PSIP1O75475 530 aaKnown RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 STSP08842 583 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 TFPIP10646 304 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 HSD3B1P14060 373 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 HSD3B2P26439 372 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 CCR2P41597 374 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 NDUFA9Q16795 377 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 TANGO2Q6ICL3 276 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 SPPL3Q8TCT6 385 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 TMEM19Q96HH6 336 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 HHIPL1Q96JK4 782 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 GAS2L1Q99501 681 aaPredicted RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 TSSK6Q9BXA6 273 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 OR51I1Q9H343 314 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 RDH14Q9HBH5 336 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 COL11A1P12107 1806 aaPredicted RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 PLOD3O60568 738 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 NTSR1P30989 418 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 CSTF2P33240 577 aaKnown RBP eCLIP14.35□□□□□ -0.11
CUX1-214ENST00000550008 PIK3CBP42338 1070 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 ATP12AP54707 1039 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 NCSTNQ92542 709 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 PDLIM5Q96HC4 596 aaKnown RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 COQ7Q99807 217 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 GPR174Q9BXC1 333 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 YTHDF1Q9BYJ9 559 aaKnown RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 PNO1Q9NRX1 252 aaKnown RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 HEMK1Q9Y5R4 338 aaPredicted RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 ST14Q9Y5Y6 855 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 TARM1B6A8C7 271 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 SLC30A4O14863 429 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 UQCRC2P22695 453 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 NDUFS1P28331 727 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 KCNC4Q03721 635 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 RGNQ15493 299 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 DPPA4Q7L190 304 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 KLHDC8AQ8IYD2 350 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CAMKVQ8NCB2 501 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 GAL3ST1Q99999 423 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 PIAS3Q9Y6X2 628 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ZNF831Q5JPB2 1677 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 DUXAA6NLW8 204 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 RIIAD1A6NNX1 92 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 H0YAE9 185 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 K7ESM1 405 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 RAB28P51157 221 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CBX3Q13185 183 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 MYBPC3Q14896 1274 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 SPATS1Q496A3 300 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 SHQ1Q6PI26 577 aaKnown RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 FAM86B1Q8N7N1 296 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TFAP2CQ92754 450 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 HDAC2Q92769 488 aaKnown RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 ZNF597Q96LX8 424 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ZNF583Q96ND8 569 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ANKRD60Q9BZ19 345 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TM7SF3Q9NS93 570 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 SLC1A7O00341 560 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CBFA2T3O75081 653 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TNFRSF21O75509 655 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 REM1O75628 298 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 MCCD1P59942 119 aaPredicted RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 NDUFAF5Q5TEU4 345 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 KHDRBS2Q5VWX1 349 aaKnown RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 CCSAPQ6IQ19 270 aaPredicted RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 ZNF554Q86TJ5 538 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TMEM102Q8N9M5 508 aaPredicted RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 GATSQ8NAP1 163 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 OR5D16Q8NGK9 328 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 OR4C6Q8NH72 309 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 OR5P2Q8WZ92 322 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ARRDC3Q96B67 414 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 PCDHGA8Q9Y5G5 932 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CROCCQ5TZA2 2017 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 SIPA1L1O43166 1804 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CENPXA8MT69 81 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TNFP01375 233 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 IFNGP01579 166 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TFAP2AP05549 437 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 CBLP22681 906 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 AHCYP23526 432 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ITGB7P26010 798 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 IMPA1P29218 277 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 HLCSP50747 726 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 GINS1Q14691 196 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 TMPRSS11AQ6ZMR5 421 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 AMIGO1Q86WK6 493 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 NRSN1Q8IZ57 195 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 IPCEF1Q8WWN9 437 aaPredicted RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 MCHR1Q99705 422 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 BARD1Q99728 777 aaKnown RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 TMEM121BQ9BXQ6 578 aaPredicted RBP14.34□□□□□ -0.11
CUX1-214ENST00000550008 IL21Q9HBE4 155 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ZDHHC7Q9NXF8 308 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 ABCG2Q9UNQ0 655 aa14.34□□□□□ -0.11
CUX1-214ENST00000550008 HAT1O14929 419 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 CLPXO76031 633 aa14.33□□□□□ -0.12
CUX1-214ENST00000550008 MYL9P24844 172 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms