RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 BLOC1S3Q6QNY0 202 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 DSELQ8IZU8 1212 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 EFCAB3Q8N7B9 438 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 AHCTF1Q8WYP5 2266 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 COQ8BQ96D53 544 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 CLIP3Q96DZ5 547 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 BHLHE41Q9C0J9 482 aaPredicted RBP15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 WDR54Q9H977 334 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 GIMAP4Q9NUV9 329 aa15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 FAM120CQ9NX05 1096 aaKnown RBP15.13■□□□□ 0.01
PRPF40A-212ENST00000545856 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 CHST10O43529 356 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 RDH16O75452 317 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 STATHP02808 62 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 CTSBP07858 339 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 ALAS2P22557 587 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 PIK3R1P27986 724 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 KIR3DL1P43629 444 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 POLR2JP52435 117 aaKnown RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 HNRNPH2P55795 449 aaKnown RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 HSD17B7P56937 341 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 CPTPQ5TA50 214 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 ARHGAP40Q5TG30 622 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 SLC48A1Q6P1K1 146 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 ZNF517Q6ZMY9 492 aaPredicted RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 FITM2Q8N6M3 262 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 TBC1D20Q96BZ9 403 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 PELOQ9BRX2 385 aaKnown RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 SORBS1Q9BX66 1292 aaKnown RBP15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 ULBP3Q9BZM4 244 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 PISDQ9UG56 409 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 NDOR1Q9UHB4 597 aa15.12■□□□□ 0.01
PRPF40A-212ENST00000545856 A0A0G2JN53 185 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 A0A1W2PP18 115 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 CCT8L1PA6NM43 557 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SGK494L7N484 410 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MEN1O00255 615 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 CYR61O00622 381 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ATP5HO75947 161 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 AIFM1O95831 613 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 NPPAP01160 153 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 PGRP06401 933 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SNRPB2P08579 225 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 COX7A2P14406 83 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 UFM1P61960 85 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ACTN3Q08043 901 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 RUNX2Q13950 521 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MLC1Q15049 377 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 CEBPEQ15744 281 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 NKAIN1Q4KMZ8 207 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 AGKQ53H12 422 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 C6orf89Q6UWU4 347 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 AMER3Q8N944 861 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 OR51Q1Q8NH59 317 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 PPCDCQ96CD2 204 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MAPKAP1Q9BPZ7 522 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 RPF2Q9H7B2 306 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 RMND5AQ9H871 391 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 APMAPQ9HDC9 416 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ACSS1Q9NUB1 689 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 DHCR7Q9UBM7 475 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ZNF282Q9UDV7 671 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 FBXW2Q9UKT8 454 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ATG4BQ9Y4P1 393 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 A0A1W2PR48 441 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 C9J4A7 227 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 RNASET2O00584 256 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 HYAL3O43820 417 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MED26O95402 600 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 DLGAP3O95886 979 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 GBAP04062 536 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 FHP07954 510 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 RBMS1P29558 406 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 S100A3P33764 101 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MAPK10P53779 464 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 OCA2Q04671 838 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SF3A3Q12874 501 aaKnown RBP eCLIP15.11■□□□□ 0.012e-7■□□□□ 10.3
PRPF40A-212ENST00000545856 CYLC2Q14093 348 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 UBAP2LQ14157 1087 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 UGT8Q16880 541 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 C3orf38Q5JPI3 329 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 PAOXQ6QHF9 649 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 QSOX2Q6ZRP7 698 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 PRSS41Q7RTY9 318 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ESX1Q8N693 406 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 PCYOX1LQ8NBM8 494 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ZFP28Q8NHY6 868 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 COL26A1Q96A83 441 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SPDL1Q96EA4 605 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 EGLN2Q96KS0 407 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 MARK4Q96L34 752 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SPRY4Q9C004 299 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 NEUROD4Q9HD90 331 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 TEX10Q9NXF1 929 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 NDE1Q9NXR1 346 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 CCDC167Q9P0B6 97 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 BAIAP2L1Q9UHR4 511 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 LEF1Q9UJU2 399 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 SATB2Q9UPW6 733 aa15.11■□□□□ 0.01
PRPF40A-212ENST00000545856 ENTPD4Q9Y227 616 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms