RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SLC3A1Q07837 685 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GINS1Q14691 196 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 MTFR2Q6P444 385 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 SLC24A5Q71RS6 500 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF366Q8N895 744 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 IL17RDQ8NFM7 739 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 KCNJ9Q92806 393 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 DHRS9Q9BPW9 319 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 KCNN2Q9H2S1 579 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GJD2Q9UKL4 321 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 LAMB2P55268 1798 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 GPR32O75388 356 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 TGFB1P01137 390 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 BCHEP06276 602 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 ETFAP13804 333 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 AMD1P17707 334 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 YBX1P67809 324 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 FKBP1BP68106 108 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 SCAPQ12770 1279 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 BIKQ13323 160 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 SLC25A25Q6KCM7 469 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 LINC00299Q6ZSB3 139 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 METTL3Q86U44 580 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 RAB8BQ92930 207 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 CXorf40BQ96DE9 158 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 CACNG6Q9BXT2 260 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 ALOXE3Q9BYJ1 711 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 RSPH9Q9H1X1 276 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 ANKRD66B4E2M5 251 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PCDH7O60245 1069 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 CXCL14O95715 111 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 H1F0P07305 194 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 CLEC2LP0C7M8 214 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PKLRP30613 574 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PPM1AP35813 382 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 MLLT1Q03111 559 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 MTAPQ13126 283 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 BCL2A1Q16548 175 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF792Q3KQV3 632 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 OTOP2Q7RTS6 562 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 RNF130Q86XS8 419 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 DENND6BQ8NEG7 585 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 AHCYL2Q96HN2 611 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 RIPOR3Q96MK2 946 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 POPDC3Q9HBV1 291 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 GPN1Q9HCN4 374 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 C6orf47O95873 294 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 HTR7P34969 479 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 RPS19P39019 145 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PTGES3Q15185 160 aaKnown RBP13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PLAG1Q6DJT9 500 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 FAM180BQ6P0A1 224 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 DLEU7Q6UYE1 221 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 PIANPQ8IYJ0 282 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 SLC43A3Q8NBI5 491 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 OR52L1Q8NGH7 329 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 TM9SF2Q99805 663 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 FOLH1BQ9HBA9 442 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 CD93Q9NPY3 652 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 MED11Q9P086 117 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 NME7Q9Y5B8 376 aa13.67□□□□□ -0.22
LIMS1-215ENST00000544547 TMEM88BA6NKF7 163 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 CNMDO75829 334 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 RPS5P46782 204 aaKnown RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 NPAS3Q8IXF0 933 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LRR1Q96L50 414 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 FAIM2Q9BWQ8 316 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 IKZF5Q9H5V7 419 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SLAMF7Q9NQ25 335 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 MUTYHQ9UIF7 546 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 DLGAP4Q9Y2H0 992 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 EVPLQ92817 2033 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 NRAPQ86VF7 1730 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 TEX13CA0A0J9YWL9 993 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 H3BUI4 141 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 HPGDSO60760 199 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ENTPD6O75354 484 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 CLDN8P56748 225 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 VSX2P58304 361 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LRRC32Q14392 662 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF697Q5TEC3 545 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LIN54Q6MZP7 749 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SNX20Q7Z614 316 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ZMIZ2Q8NF64 920 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 YIPF6Q96EC8 236 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 AIFM2Q9BRQ8 373 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 TTTY10Q9BZA0 68 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 SLC29A3Q9BZD2 475 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PSORS1C1Q9UIG5 152 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 A0A1W2PRB8 838 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 AKAP8O43823 692 aaKnown RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 OR6A2O95222 327 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PROS1P07225 676 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 ASGR1P07306 291 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 NUDT7P0C024 238 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LAMP1P11279 417 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 LHCGRP22888 699 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 TAGLNQ01995 201 aaKnown RBP13.66□□□□□ -0.22
LIMS1-215ENST00000544547 NKG7Q16617 165 aa13.66□□□□□ -0.22
LIMS1-215ENST00000544547 PRSS36Q5K4E3 855 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms