RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 NAGLUP54802 743 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 CDH13P55290 713 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 PKNOX1P55347 436 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 MAGOHP61326 146 aaKnown RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 KLC1Q07866 573 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 RGS1Q08116 209 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 LCP2Q13094 533 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 TESK1Q15569 626 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 INAQ16352 499 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 C3AR1Q16581 482 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 HKDC1Q2TB90 917 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 TMEM214Q6NUQ4 689 aaKnown RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 NIPAL1Q6NVV3 410 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SPNS3Q6ZMD2 512 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 FRMD7Q6ZUT3 714 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 NCCRP1Q6ZVX7 275 aaPredicted RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 RPS27LQ71UM5 84 aaKnown RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 MILR1Q7Z6M3 343 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 C10orf107Q8IVU9 208 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 HOMEZQ8IX15 550 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 OR7G3Q8NG95 312 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 OR4F6Q8NGB9 312 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 OR52B6Q8NGF0 335 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 STT3BQ8TCJ2 826 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SREK1Q8WXA9 508 aaKnown RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 REPS1Q96D71 796 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 MAGED4Q96JG8 741 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 C10orf90Q96M02 699 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF382Q96SR6 550 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 TRMOQ9BU70 441 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SLC6A16Q9GZN6 736 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 DRC3Q9H069 523 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 ACBD3Q9H3P7 528 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 GSTO2Q9H4Y5 243 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF304Q9HCX3 659 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SEMA4BQ9NPR2 832 aaPredicted RBP8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 PSD3Q9NYI0 1048 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 TRPS1Q9UHF7 1281 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 C3orf18Q9UK00 162 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 PPT2Q9UMR5 302 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 CDC14AQ9UNH5 594 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 SLC22A7Q9Y694 548 aa8.19□□□□□ -1.1
CLSTN3-212ENST00000541770 ADGRG4Q8IZF6 3080 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 NCOA6Q14686 2063 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 HEATR5BQ9P2D3 2071 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 TMEM120BA0PK00 339 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 HMGB1P1B2RPK0 211 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 PPP6CO00743 305 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 BIRC5O15392 142 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ATP8B1O43520 1251 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 NPHS1O60500 1241 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SASH3O75995 380 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 MED26O95402 600 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 NSA2O95478 260 aaKnown RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ESRRBO95718 433 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 WDPCPO95876 746 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 TBX6O95947 436 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 BPGMP07738 259 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CELA2AP08217 269 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZGLP1P0C6A0 271 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 PRR35P0CG20 571 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SMIM10L1P0DMW3 83 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SERPINB5P36952 375 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SERPINB4P48594 390 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ART1P52961 327 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 STXBP1P61764 594 aaKnown RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SKP1P63208 163 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 PHEXP78562 749 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 GALNT1Q10472 559 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 HYAL2Q12891 473 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 MPP2Q14168 576 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 HERC3Q15034 1050 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CDSNQ15517 529 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CPSF6Q16630 551 aaKnown RBP eCLIP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ADPRMQ3LIE5 342 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CFAP157Q5JU67 520 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 LETMD1Q6P1Q0 360 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 MEX3BQ6ZN04 569 aaKnown RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 NDUFAF7Q7L592 441 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 VN1R5Q7Z5H4 357 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 MYLK4Q86YV6 388 aaPredicted RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 AFAP1L2Q8N4X5 818 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CCNYL1Q8N7R7 359 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 GOLGA6L1Q8N7Z2 621 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 KCT2Q8NC54 265 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 OR6Y1Q8NGX8 325 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 DNAJB8Q8NHS0 232 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 WDR20Q8TBZ3 569 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 TRPC4APQ8TEL6 797 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZNF473Q8WTR7 871 aaKnown RBP8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 HAS2Q92819 552 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ARL8AQ96BM9 186 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ZBTB9Q96C00 473 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 C14orf79Q96F83 325 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 SMIM10Q96HG1 83 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 ATP6V1G3Q96LB4 118 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 CDK15Q96Q40 435 aa8.18□□□□□ -1.1
CLSTN3-212ENST00000541770 MECRQ9BV79 373 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms