RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	DEPDC1	Q5TB30	811 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204		Q8N9G6	341 aa	Predicted RBP	11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF740	Q8NDX6	193 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	B3GNT7	Q8NFL0	401 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	SMARCD2	Q92925	531 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	GTPBP3	Q969Y2	492 aa	Known RBP	11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	TM7SF3	Q9NS93	570 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	IMPAD1	Q9NX62	359 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	DUSP12	Q9UNI6	340 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	POFUT2	Q9Y2G5	429 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	SLC27A6	Q9Y2P4	619 aa		11.96	□□□□□ -0.5
RNF4-222	ENST00000541204	TCF20	Q9UGU0	1960 aa	Known RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	EDDM13	A0A1B0GTR0	161 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204		H0YIV9	168 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PSMD11	O00231	422 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	HAT1	O14929	419 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ASNA1	O43681	348 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PTTG1	O95997	202 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ADRA2A	P08913	450 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ANXA8	P13928	327 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PPIB	P23284	216 aa	Known RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ASMT	P46597	345 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	SLBP	Q14493	270 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	IFI44L	Q53G44	452 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ANXA8L1	Q5VT79	327 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	TANGO2	Q6ICL3	276 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	GRHL2	Q6ISB3	625 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	FAM180B	Q6P0A1	224 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	CYP4Z2P	Q8N1L4	340 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	CLIP4	Q8N3C7	705 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	NFKBID	Q8NI38	313 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	SUSD6	Q92537	303 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	OR5M11	Q96RB7	305 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	OR51B5	Q9H339	312 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	CCDC59	Q9P031	241 aa	Known RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ACSL6	Q9UKU0	697 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	EXO1	Q9UQ84	846 aa	Known RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	A3GALT2	U3KPV4	340 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PCDH17	O14917	1159 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PCCB	P05166	539 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PBX2	P40425	430 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	NR4A2	P43354	598 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	DGKE	P52429	567 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	UGT2B15	P54855	530 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	KCNC3	Q14003	757 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	GANAB	Q14697	944 aa	Known RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	MED22	Q15528	200 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	FBXO43	Q4G163	708 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	CCBE1	Q6UXH8	406 aa	Predicted RBP	11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	UTS2B	Q765I0	119 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	SPATC1	Q76KD6	591 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	GDPD3	Q7L5L3	318 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	NLGN4X	Q8N0W4	816 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	OR56A3	Q8NH54	315 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	PHOSPHO2	Q8TCD6	241 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	COQ8B	Q96D53	544 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	CTRC	Q99895	268 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	SPNS1	Q9H2V7	528 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	EHD1	Q9H4M9	534 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	ASF1A	Q9Y294	204 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	RWDD3	Q9Y3V2	267 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	SNX8	Q9Y5X2	465 aa		11.95	□□□□□ -0.5
RNF4-222	ENST00000541204	C5orf67	F2Z3F1	127 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	SSX4	O60224	188 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	LILRB5	O75023	590 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	MED26	O95402	600 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	NPPB	P16860	134 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	P2RY2	P41231	377 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	LIMK1	P53667	647 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF33B	Q06732	778 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CNTN1	Q12860	1018 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	SCARB2	Q14108	478 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	SLCO4C1	Q6ZQN7	724 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	RTL10	Q7L3V2	364 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CAMKMT	Q7Z624	323 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	RASGRP3	Q8IV61	690 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	NRSN1	Q8IZ57	195 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	DEPDC4	Q8N2C3	294 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	PSD4	Q8NDX1	1056 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	DENND6B	Q8NEG7	585 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	OR5AK3P	Q8NH89	298 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CHTF18	Q8WVB6	975 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	KLK6	Q92876	244 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	KCNS3	Q9BQ31	491 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	SLC35A5	Q9BS91	424 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	BRF2	Q9HAW0	419 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	PCDHGB6	Q9Y5F9	930 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	RNASET2	O00584	256 aa	Known RBP	11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	KMO	O15229	486 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	KIAA0513	O60268	411 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	TNFRSF21	O75509	655 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	C6orf47	O95873	294 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	HNF4A	P41235	474 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	MC1R	Q01726	317 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	DOC2B	Q14184	412 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms