RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RNF4P78317 190 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 REEP5Q00765 189 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TIAL1Q01085 375 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 KIF5AQ12840 1032 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 RBBP5Q15291 538 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TOR1AIP1Q5JTV8 583 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 LRRC8AQ8IWT6 810 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF595Q8IYB9 648 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 GPATCH11Q8N954 259 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 MORN4Q8NDC4 146 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TMEM52Q8NDY8 209 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TNIP2Q8NFZ5 429 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 OR5L2Q8NGL0 311 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 LINC01560Q8TB33 94 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 CALML6Q8TD86 181 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 PTPMT1Q8WUK0 201 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 ATL1Q8WXF7 558 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 DAZLQ92904 295 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF669Q96BR6 464 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 FAR2Q96K12 515 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 COX4I2Q96KJ9 171 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 CAPZA3Q96KX2 299 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 AIF1LQ9BQI0 150 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 TRIM54Q9BYV2 358 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 AICDAQ9GZX7 198 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 ACKR4Q9NPB9 350 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 FBXO5Q9UKT4 447 aa10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 MRPS33Q9Y291 106 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 FBN1P35555 2871 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-209ENST00000539982 SDR42E2A6NKP2 422 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 CLCA1A8K7I4 914 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 IL2RAP01589 272 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 IFNA16P05015 189 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 RFPL3SP0C7P2 107 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 PIGAP37287 484 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 HNRNPFP52597 415 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 AP1S2P56377 157 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 RAB38P57729 211 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 STXBP1P61764 594 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 CCZ1BP86790 482 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 CCZ1P86791 482 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 SIX1Q15475 284 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 SLC22A10Q63ZE4 541 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 PAQR3Q6TCH7 311 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 CAND1Q86VP6 1230 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 CXorf67Q86X51 503 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 NEIL3Q8TAT5 605 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 SREK1Q8WXA9 508 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 FBXL8Q96CD0 374 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 YIPF4Q9BSR8 244 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 PELI2Q9HAT8 420 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 ZFP64Q9NPA5 681 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 C20orf96Q9NUD7 363 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 QPCTLQ9NXS2 382 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 TAS2R13Q9NYV9 303 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 VTI1BQ9UEU0 232 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 MAD1L1Q9Y6D9 718 aa10.72□□□□□ -0.69
CLSTN3-209ENST00000539982 PABPN1LA6NDY0 278 aaKnown RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 NRDCO43847 1150 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 CTNSO60931 367 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 HRGP04196 525 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TNNI3P19429 210 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 SAT1P21673 171 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 MAGEA6P43360 314 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 KCNJ1P48048 391 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TERF1P54274 439 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 SORDQ00796 357 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TBL3Q12788 808 aaKnown RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 MPEG1Q2M385 716 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF791Q3KP31 576 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ACSF3Q4G176 576 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 PIGGQ5H8A4 983 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 NXPE4Q6UWF7 544 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 CLNKQ7Z7G1 428 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 LACC1Q8IV20 430 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 P3H2Q8IVL5 708 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 CIARTQ8N365 385 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 LRRC25Q8N386 305 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TXLNBQ8N3L3 684 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF321PQ8N8H1 164 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 SIMC1Q8NDZ2 872 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 OR14A16Q8NHC5 309 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 GAL3ST3Q96A11 431 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 LINGO1Q96FE5 620 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TSNARE1Q96NA8 513 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 NDNQ99608 321 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ALOXE3Q9BYJ1 711 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 OR8D2Q9GZM6 311 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 EPB41L4BQ9H329 900 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 KCNF1Q9H3M0 494 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ZNF703Q9H7S9 590 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 SH2D2AQ9NP31 389 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 TRMT1Q9NXH9 659 aaKnown RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 BOKQ9UMX3 212 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ZKSCAN5Q9Y2L8 839 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 DYRK1BQ9Y463 629 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 CAPN6Q9Y6Q1 641 aa10.71□□□□□ -0.69
CLSTN3-209ENST00000539982 ATRQ13535 2644 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms