RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	ATXN3	P54252	364 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	ABCE1	P61221	599 aa	Known RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	CCZ1B	P86790	482 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	CCZ1	P86791	482 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	HNRNPA0	Q13151	305 aa	Known RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	DRP2	Q13474	957 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	GCKR	Q14397	625 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	WSCD2	Q2TBF2	565 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	RFTN2	Q52LD8	501 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	RTL6	Q6ICC9	239 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	C1orf186	Q6ZWK4	172 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	CACUL1	Q86Y37	369 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	KDM8	Q8N371	416 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR6M1	Q8NGM8	313 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	HCAR2	Q8TDS4	363 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	PCED1B	Q96HM7	432 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	RPGRIP1	Q96KN7	1286 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF300	Q96RE9	604 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF577	Q9BSK1	485 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	WWP1	Q9H0M0	922 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	GAN	Q9H2C0	597 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	DNPEP	Q9ULA0	475 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	PIN4	Q9Y237	131 aa	Known RBP	4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710	UMODL1	Q5DID0	1318 aa		4.63	□□□□□ -1.67
PRKDC-208	ENST00000536710		A0A087WYN8	130 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	SRRM4	A7MD48	611 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	TMCO5B	A8MYB1	307 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	NPIPB9	F8W1W9	429 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	NR5A2	O00482	541 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	LINC01565	O15544	149 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	KRT86	O43790	486 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CEACAM4	O75871	244 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	FGF19	O95750	216 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	IGKV3-20	P01619	116 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	PGK2	P07205	417 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CT45A8	P0DMV1	189 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CT45A9	P0DMV2	189 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	AOC1	P19801	751 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	PDHA2	P29803	388 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	HSPA1L	P34931	641 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CCR4	P51679	360 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CYCS	P99999	105 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	KRT81	Q14533	505 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	TMEM30B	Q3MIR4	351 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	GPAT3	Q53EU6	434 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	MPPE1	Q53F39	396 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CT45A2	Q5DJT8	189 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CMPK2	Q5EBM0	449 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	NKAIN2	Q5VXU1	208 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	ISLR2	Q6UXK2	745 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF730	Q6ZMV8	503 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	NOTCH2NL	Q7Z3S9	236 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	MRPL43	Q8N983	215 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	NUP37	Q8NFH4	326 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	TBC1D31	Q96DN5	1066 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	MRPL53	Q96EL3	112 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	CNRIP1	Q96F85	164 aa	Predicted RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	ART5	Q96L15	291 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	KRT12	Q99456	494 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	BARHL1	Q9BZE3	327 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	SLC26A1	Q9H2B4	701 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	MED20	Q9H944	212 aa		4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	TEX10	Q9NXF1	929 aa	Predicted RBP	4.62	□□□□□ -1.67
PRKDC-208	ENST00000536710	SHISA7	A6NL88	538 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710		A8MU76	341 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	C19orf81	C9J6K1	198 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	CCS	O14618	274 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	CS	O75390	466 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF821	O75541	412 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	MTRF1	O75570	445 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR6A2	O95222	327 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	DUS4L	O95620	317 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	ANGPTL1	O95841	491 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	GHR	P10912	638 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	KRT5	P13647	590 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	CLK1	P49759	484 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	GMFB	P60983	142 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	SST	P61278	116 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	RBBP4	Q09028	425 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	MSLN	Q13421	630 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	GAMT	Q14353	236 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR1C1	Q15619	314 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	MTHFSD	Q2M296	383 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	KLHL22	Q53GT1	634 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	LCE1A	Q5T7P2	110 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	NEK5	Q6P3R8	708 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	KIF6	Q6ZMV9	814 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR52B6	Q8NGF0	335 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	C8orf46	Q8TAG6	207 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	LIPH	Q8WWY8	451 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	SLCO2A1	Q92959	643 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	ESAM	Q96AP7	390 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	TMEM186	Q96B77	213 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	RAB39B	Q96DA2	213 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	SPAG8	Q99932	426 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	GDF3	Q9NR23	364 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	HOMER3	Q9NSC5	361 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	PLA2G4C	Q9UP65	541 aa		4.61	□□□□□ -1.67
PRKDC-208	ENST00000536710	MRPS2	Q9Y399	296 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms