RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CLDN4O14493 209 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 ESRRBO95718 433 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 RAP1GDS1P52306 607 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 HNRNPH2P55795 449 aaKnown RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 SLC26A5P58743 744 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 NAA20P61599 178 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 AP2B1P63010 937 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 IGLV3-21P80748 117 aaPredicted RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 ZNF33BQ06732 778 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 GALNT1Q10472 559 aaPredicted RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 RCN2Q14257 317 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 PCLAFQ15004 111 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 BTBD16Q32M84 506 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 PLEKHN1Q494U1 663 aaPredicted RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 COLEC12Q5KU26 742 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 TCHHL1Q5QJ38 904 aaPredicted RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 ISLR2Q6UXK2 745 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 GPRIN3Q6ZVF9 776 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 GPR180Q86V85 440 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 ARMC10Q8N2F6 343 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 METTL4Q8N3J2 472 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 CDYL2Q8N8U2 506 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 APCDD1LQ8NCL9 501 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 PNPLA2Q96AD5 504 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 NPAS2Q99743 824 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 CENPKQ9BS16 269 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 MRPL1Q9BYD6 325 aaKnown RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 ELOVL6Q9H5J4 265 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 TNFRSF12AQ9NP84 129 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 PRTFDC1Q9NRG1 225 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 SLC17A7Q9P2U7 560 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 VTI1BQ9UEU0 232 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 ADAM29Q9UKF5 820 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 SNX6Q9UNH7 406 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 MRPS33Q9Y291 106 aaKnown RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 B3GNT3Q9Y2A9 372 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 CSAG2Q9Y5P2 127 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 HEMK1Q9Y5R4 338 aaPredicted RBP12.15□□□□□ -0.46
VPS28-216ENST00000533806 MYO18BQ8IUG5 2567 aa12.15□□□□□ -0.47
VPS28-216ENST00000533806 TNRC6AQ8NDV7 1962 aaKnown RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 DOCK10Q96BY6 2186 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 A0A1W2PR48 441 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 SYNDIG1LA6NDD5 238 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 SAGE2PA6NJ88 616 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 SLC28A2O43868 658 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 ENO1P06733 434 aaKnown RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 FAM58BPP0C7Q3 252 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 HSD3B1P14060 373 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 HSD3B2P26439 372 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 TPP2P29144 1249 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 PPP2R1BP30154 601 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 ARL1P40616 181 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 ETV4P43268 484 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 FOXA1P55317 472 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 ACTN3Q08043 901 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 SGO1Q5FBB7 561 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 BEND6Q5SZJ8 279 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 LIPMQ5VYY2 423 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 B3GNTL1Q67FW5 361 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 TTC19Q6DKK2 380 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 C10orf107Q8IVU9 208 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 ZADH2Q8N4Q0 377 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 SIRT6Q8N6T7 355 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 CCNYL1Q8N7R7 359 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 ARMC2Q8NEN0 867 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 OR6Y1Q8NGX8 325 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 METTL6Q8TCB7 284 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 TCP10LQ8TDR4 215 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 PTPMT1Q8WUK0 201 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 TM9SF4Q92544 642 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 HAS2Q92819 552 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 C11orf24Q96F05 449 aaPredicted RBP12.14□□□□□ -0.47
VPS28-216ENST00000533806 ZIM3Q96PE6 472 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 PTGFRNQ9P2B2 879 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 FBXW2Q9UKT8 454 aa12.14□□□□□ -0.47
VPS28-216ENST00000533806 CCDC151A5D8V7 595 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 WASHC1A8K0Z3 465 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 FGF17O60258 216 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 ULK1O75385 1050 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 SPAG7O75391 227 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 KRT6AP02538 564 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 GBAP04062 536 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 KRT6BP04259 564 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 CHN1P15882 459 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 CPN2P22792 545 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 KRT6CP48668 564 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 HTR6P50406 440 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 TNFRSF17Q02223 184 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 TLE1Q04724 770 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 CSTF3Q12996 717 aaKnown RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 SLC13A2Q13183 592 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 ELAVL1Q15717 326 aaKnown RBP12.13□□□□□ -0.47
VPS28-216ENST00000533806 KRT71Q3SY84 523 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 IRAK1BP1Q5VVH5 260 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 C18orf63Q68DL7 685 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 LRIG3Q6UXM1 1119 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 LINC00696Q6ZRV3 163 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 PRICKLE2Q7Z3G6 844 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 COMMD6Q7Z4G1 85 aa12.13□□□□□ -0.47
VPS28-216ENST00000533806 CLNKQ7Z7G1 428 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms